Factsheet for PGSC0003DMT400076591

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g104550.2.1	Tomato	nucleus	96.85	84.21
CDX81493	Canola	nucleus	35.35	47.1
Bra004285.1-P	Field mustard	nucleus	35.35	44.51
CDX96044	Canola	nucleus	35.11	44.21
CDY01891	Canola	nucleus	34.87	43.9
VIT_12s0055g00340.t01	Wine grape	nucleus	50.61	42.92
KRH58361	Soybean	nucleus	48.91	41.65
AT1G68150.1	Thale cress	nucleus	34.14	37.7
GSMUA_Achr3P20290_001	Banana	nucleus	33.66	36.29
GSMUA_Achr7P18820_001	Banana	nucleus	36.56	33.63
GSMUA_Achr6P02330_001	Banana	nucleus	30.02	33.6
GSMUA_Achr10P...	Banana	nucleus	38.26	32.99
PGSC0003DMT400073710	Potato	nucleus	16.95	32.26
PGSC0003DMT400019058	Potato	nucleus	18.89	29.89
TraesCS6A01G326500.2	Wheat	nucleus	37.53	28.03
EES05866	Sorghum	nucleus	39.23	28.03
PGSC0003DMT400017859	Potato	nucleus	30.02	27.99
TraesCS6D01G306300.1	Wheat	nucleus	37.53	27.73
PGSC0003DMT400019061	Potato	nucleus	16.95	27.67
Zm00001d018203_P001	Maize	nucleus	38.5	27.46
TraesCS6B01G357600.1	Wheat	nucleus	37.05	27.32
PGSC0003DMT400046570	Potato	nucleus	33.9	26.67
Os02t0770500-00	Rice	nucleus	39.71	25.27
PGSC0003DMT400056725	Potato	nucleus	30.27	25.2
HORVU6Hr1G079710.2	Barley	nucleus	37.53	25.0
PGSC0003DMT400042400	Potato	nucleus	30.99	23.15
PGSC0003DMT400073396	Potato	nucleus	19.85	22.78
PGSC0003DMT400038852	Potato	nucleus	30.02	22.26
PGSC0003DMT400051047	Potato	nucleus	18.64	21.69

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1CX14	PFAM:PF03106
EnsemblPlantsGene:PGSC0003DMG400029779	PGSC:PGSC0003DMG400029779	EnsemblPlants:PGSC0003DMT400076591	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF24
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002952752	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

WRKY transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400029779]

Coordinates

chr1:+:81380085..81382117

Molecular Weight (calculated)

45944.5 Da

IEP (calculated)

8.181

GRAVY (calculated)

-0.802

Length

413 amino acids

Sequence
(BLAST)

001: MLEKEMKRMK EENKVLRKAV EQTMKDYYDL QAKFSIHQNN HKDHKNFLSL SGNDDTSEGQ TRVPKILDIL NTNRITSPTS LEDDTMDGDH ELGLSLTLVS
101: SNSTTSSKLV EILEEDQRKE KKDHPSINHQ IQNKPQNLGG LTSHVTTASP PNRKSRVSVR ARCESATMND GCQWRKYGQK IAKGSPNCPR AYYRCTVAPG
201: CPVRKQVQRC LEDMSILITT YEGTHNHPLP VGATAMASTA SAAASFMLVD SSISPLFNHN SNLNQPLNFP NYHHNLAPNY HHSSSSPYNF SNLRNNILNS
301: SDPNSSQGNL VLDLTKNMSN NNHQFPFASS SSNNHELGHS NWMSKLSNYE GNNLFAGPKL QGEHHYNNNN NIPPMLAHEN MSAITSDPKF RVAVAAAISS
401: LINKDQSNST GES

Best Arabidopsis Sequence Match ( AT1G68150.1 )
(BLAST)

001: MGFDFSTSKS KAKRQKRIEV RFASPLMGID LSLKLEAEEK KKEIEGSKHS RENKEDEEHD ASGDEDEQMV KEDEDDSSSL GLRTREEENE REELLQLQIQ
101: MESVKEENTR LRKLVEQTLE DYRHLEMKFP VIDKTKKMDL EMFLGVQGKR CVDITSKARK RGAERSPSME REIGLSLSLE KKQKQEESKE AVQSHHQRYN
201: SSSLDMNMPR IISSSQGNRK ARVSVRARCE TATMNDGCQW RKYGQKTAKG NPCPRAYYRC TVAPGCPVRK QVQRCLEDMS ILITTYEGTH NHPLPVGATA
301: MASTASTSPF LLLDSSDNLS HPSYYQTPQA IDSSLITYPQ NSSYNNRTIR SLNFDGPSRG DHVSSSQNRL NWMM

Arabidopsis Description

WRKY9WRKY9 [Source:UniProtKB/TrEMBL;Acc:A0A178WJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.