Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G136200.1 | Wheat | nucleus | 93.8 | 95.69 |
| TraesCS6A01G146900.1 | Wheat | nucleus | 93.8 | 95.14 |
| HORVU6Hr1G028790.1 | Barley | nucleus | 91.83 | 92.35 |
| Os02t0181300-01 | Rice | nucleus | 69.3 | 70.69 |
| EES04642 | Sorghum | nucleus | 71.55 | 69.78 |
| Zm00001d053746_P001 | Maize | nucleus | 62.54 | 69.16 |
| Zm00001d015515_P001 | Maize | nucleus | 67.32 | 68.88 |
| TraesCS7B01G418500.2 | Wheat | nucleus | 53.24 | 57.45 |
| TraesCS7B01G419400.1 | Wheat | nucleus | 50.14 | 55.28 |
| TraesCS7B01G418400.1 | Wheat | nucleus | 50.42 | 54.91 |
| TraesCS7B01G418600.1 | Wheat | nucleus | 41.69 | 51.21 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 37.18 | 47.14 |
| PGSC0003DMT400073710 | Potato | nucleus | 28.17 | 46.08 |
| Bra019123.1-P | Field mustard | nucleus | 25.07 | 45.88 |
| Solyc12g042590.1.1 | Tomato | nucleus | 27.32 | 44.91 |
| Solyc08g067340.2.1 | Tomato | nucleus | 31.27 | 43.87 |
| PGSC0003DMT400019061 | Potato | nucleus | 30.99 | 43.48 |
| Solyc08g067360.2.1 | Tomato | nucleus | 30.42 | 41.86 |
| KRH61669 | Soybean | nucleus | 25.92 | 41.82 |
| PGSC0003DMT400019058 | Potato | nucleus | 30.7 | 41.76 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 36.34 | 41.48 |
| KRH15674 | Soybean | nucleus | 32.68 | 41.13 |
| CDX75196 | Canola | nucleus | 32.68 | 40.99 |
| CDX72327 | Canola | nucleus | 32.68 | 40.7 |
| KRH47344 | Soybean | nucleus | 35.49 | 40.51 |
| KRH23643 | Soybean | nucleus | 34.93 | 40.13 |
| AT2G25000.1 | Thale cress | nucleus | 30.42 | 39.85 |
| KRH44560 | Soybean | nucleus | 34.93 | 39.62 |
| Bra008435.1-P | Field mustard | nucleus | 31.55 | 38.62 |
| CDY22299 | Canola | nucleus | 31.55 | 38.62 |
| CDY67287 | Canola | nucleus | 31.27 | 38.28 |
| AT1G80840.1 | Thale cress | nucleus | 32.39 | 38.08 |
| Bra003588.1-P | Field mustard | nucleus | 31.83 | 38.05 |
| CDX67971 | Canola | nucleus | 31.83 | 38.05 |
| Bra035148.1-P | Field mustard | nucleus | 32.11 | 38.0 |
| CDX87347 | Canola | nucleus | 32.11 | 38.0 |
| Bra010220.1-P | Field mustard | nucleus | 32.96 | 37.99 |
| CDX88573 | Canola | nucleus | 32.11 | 37.87 |
| CDY39879 | Canola | nucleus | 32.68 | 37.78 |
| CDX68787 | Canola | nucleus | 33.8 | 37.62 |
| Bra011299.1-P | Field mustard | nucleus | 33.52 | 37.54 |
| KRH05350 | Soybean | nucleus | 32.96 | 37.5 |
| CDX79347 | Canola | nucleus | 31.27 | 37.25 |
| AT4G31800.1 | Thale cress | nucleus | 32.39 | 37.1 |
| KRH09652 | Soybean | nucleus | 34.08 | 36.67 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 32.39 | 36.28 |
| Solyc03g116890.2.1 | Tomato | nucleus | 34.08 | 34.57 |
| Solyc06g068460.2.1 | Tomato | nucleus | 34.93 | 34.44 |
| PGSC0003DMT400073396 | Potato | nucleus | 34.65 | 34.17 |
| PGSC0003DMT400051047 | Potato | nucleus | 33.24 | 33.24 |
| Bra023983.1-P | Field mustard | nucleus | 31.83 | 32.75 |
| CDY70096 | Canola | nucleus | 31.83 | 32.75 |
| KRH52329 | Soybean | nucleus | 28.45 | 32.69 |
| TraesCS5B01G224000.1 | Wheat | nucleus | 29.86 | 32.02 |
| TraesCS5B01G224100.1 | Wheat | nucleus | 29.58 | 31.82 |
| TraesCS3B01G130000.1 | Wheat | nucleus | 21.97 | 15.92 |
| TraesCS3B01G199000.2 | Wheat | nucleus | 24.23 | 14.83 |
| TraesCS1B01G434300.1 | Wheat | nucleus | 24.51 | 13.9 |
| TraesCS6B01G357600.1 | Wheat | nucleus | 21.41 | 13.57 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0002237 | GO:GO:0002238 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 |
| GO:GO:0009414 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009611 | GO:GO:0009617 | GO:GO:0009620 |
| GO:GO:0009623 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009737 |
| GO:GO:0009739 | GO:GO:0009751 | GO:GO:0009753 | GO:GO:0009938 | GO:GO:0009987 | GO:GO:0010200 |
| GO:GO:0031347 | GO:GO:0043565 | GO:GO:0045892 | GO:GO:1990841 | InterPro:IPR003657 | InterPro:IPR036576 |
| PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF9 | SMART:SM00774 | SUPFAM:SSF118290 |
| EnsemblPlantsGene:TraesCS6B01G175100 | EnsemblPlants:TraesCS6B01G175100.2 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : |
Description
No Description!
Coordinates
chr6B:-:190123120..190124294
Molecular Weight (calculated)
38774.4 Da
IEP (calculated)
7.939
GRAVY (calculated)
-0.829
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPWVSSQPS LSLDLHVGLP PMGHPHSHHQ AAPMVALAKP KVLVEENFMQ LKKDPEVAVL ESELQRVSEE NRRLGEMLRE VASKYETLQG QFTDMVTAGA
101: HAGGNNHYNN QPSSASEGGS VSPSRKRKSE ESNGTPPPSH QQQQQHYAGG LAYAAAPDQA ECTSGEPCKR IREECKPVIS KRYVHADPAD LSLVVKDGYQ
201: WRKYGQKVTK DNPCPRAYFR CSFAPGCPVK KKVQRSAEDK TILVATYEGE HNHSQPPSSQ PQQQNDGSGA GKNAGKPPQA PATPHHPQQH QQQHKQEAPA
301: VAVSGESAAA ESEMIRRNLA EQMAMTLTRD PSFKAALVTA LSGRILELSP TRDIN
101: HAGGNNHYNN QPSSASEGGS VSPSRKRKSE ESNGTPPPSH QQQQQHYAGG LAYAAAPDQA ECTSGEPCKR IREECKPVIS KRYVHADPAD LSLVVKDGYQ
201: WRKYGQKVTK DNPCPRAYFR CSFAPGCPVK KKVQRSAEDK TILVATYEGE HNHSQPPSSQ PQQQNDGSGA GKNAGKPPQA PATPHHPQQH QQQHKQEAPA
301: VAVSGESAAA ESEMIRRNLA EQMAMTLTRD PSFKAALVTA LSGRILELSP TRDIN
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.