Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G419400.1 | Wheat | nucleus | 89.81 | 90.37 |
| TraesCS7B01G418400.1 | Wheat | nucleus | 90.43 | 89.88 |
| HORVU7Hr1G113830.1 | Barley | nucleus | 84.26 | 85.58 |
| TraesCS7A01G509000.1 | Wheat | nucleus | 88.27 | 82.18 |
| TraesCS7A01G508800.1 | Wheat | nucleus | 81.48 | 80.73 |
| TraesCS7D01G497300.1 | Wheat | plastid | 88.89 | 77.42 |
| Os06t0649000-01 | Rice | nucleus | 61.42 | 59.05 |
| Zm00001d036726_P001 | Maize | nucleus | 60.19 | 56.69 |
| EER90124 | Sorghum | nucleus | 59.26 | 56.14 |
| EER88729 | Sorghum | nucleus | 58.95 | 54.89 |
| Zm00001d046805_P001 | Maize | nucleus | 59.26 | 54.7 |
| TraesCS6A01G146900.1 | Wheat | nucleus | 56.79 | 52.57 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 39.81 | 46.07 |
| Bra019123.1-P | Field mustard | nucleus | 26.23 | 43.81 |
| PGSC0003DMT400073710 | Potato | nucleus | 27.16 | 40.55 |
| Solyc12g042590.1.1 | Tomato | nucleus | 26.85 | 40.28 |
| KRH61669 | Soybean | nucleus | 27.16 | 40.0 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 38.27 | 39.87 |
| KRH23643 | Soybean | nucleus | 37.96 | 39.81 |
| CDX67971 | Canola | nucleus | 36.42 | 39.73 |
| Bra003588.1-P | Field mustard | nucleus | 36.42 | 39.73 |
| KRH15674 | Soybean | nucleus | 34.57 | 39.72 |
| Bra035148.1-P | Field mustard | nucleus | 36.73 | 39.67 |
| CDX87347 | Canola | nucleus | 36.73 | 39.67 |
| CDY22299 | Canola | nucleus | 35.49 | 39.66 |
| Bra008435.1-P | Field mustard | nucleus | 35.49 | 39.66 |
| Solyc08g067340.2.1 | Tomato | nucleus | 30.86 | 39.53 |
| CDY67287 | Canola | nucleus | 35.19 | 39.31 |
| CDX88573 | Canola | nucleus | 36.42 | 39.2 |
| PGSC0003DMT400019058 | Potato | nucleus | 31.48 | 39.08 |
| KRH47344 | Soybean | nucleus | 37.35 | 38.91 |
| AT1G80840.1 | Thale cress | nucleus | 36.11 | 38.74 |
| PGSC0003DMT400019061 | Potato | nucleus | 30.25 | 38.74 |
| CDX79347 | Canola | nucleus | 35.49 | 38.59 |
| CDX72327 | Canola | nucleus | 33.64 | 38.25 |
| Solyc08g067360.2.1 | Tomato | nucleus | 30.25 | 37.98 |
| AT2G25000.1 | Thale cress | nucleus | 31.48 | 37.64 |
| CDX75196 | Canola | nucleus | 32.72 | 37.46 |
| KRH44560 | Soybean | nucleus | 36.11 | 37.38 |
| KRH09652 | Soybean | nucleus | 37.65 | 36.97 |
| Bra010220.1-P | Field mustard | nucleus | 34.26 | 36.04 |
| CDY39879 | Canola | nucleus | 33.95 | 35.83 |
| CDX68787 | Canola | nucleus | 34.57 | 35.11 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 34.26 | 35.02 |
| Bra011299.1-P | Field mustard | nucleus | 34.26 | 35.02 |
| KRH05350 | Soybean | nucleus | 33.64 | 34.94 |
| TraesCS5A01G225500.1 | Wheat | nucleus | 29.01 | 34.69 |
| AT4G31800.1 | Thale cress | nucleus | 33.02 | 34.52 |
| TraesCS5A01G225600.1 | Wheat | nucleus | 34.26 | 33.53 |
| KRH52329 | Soybean | nucleus | 31.17 | 32.69 |
| PGSC0003DMT400073396 | Potato | nucleus | 35.19 | 31.67 |
| Solyc06g068460.2.1 | Tomato | nucleus | 34.88 | 31.39 |
| CDY70096 | Canola | nucleus | 33.33 | 31.3 |
| Bra023983.1-P | Field mustard | nucleus | 33.33 | 31.3 |
| Solyc03g116890.2.1 | Tomato | nucleus | 33.33 | 30.86 |
| PGSC0003DMT400051047 | Potato | nucleus | 33.02 | 30.14 |
| TraesCS3A01G167200.1 | Wheat | nucleus | 24.38 | 13.74 |
| TraesCS7A01G096500.1 | Wheat | nucleus | 24.38 | 12.93 |
| TraesCS4A01G396400.2 | Wheat | nucleus | 23.77 | 12.81 |
| TraesCS6A01G326500.2 | Wheat | nucleus | 21.6 | 12.66 |
| TraesCS4A01G396300.1 | Wheat | nucleus | 22.84 | 12.65 |
| TraesCS7A01G096300.1 | Wheat | nucleus | 22.84 | 12.25 |
| TraesCS4A01G396200.1 | Wheat | nucleus | 21.6 | 11.57 |
| TraesCS7A01G096200.1 | Wheat | nucleus | 8.33 | 11.16 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 |
| PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF33 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS7A01G508700 |
| EnsemblPlants:TraesCS7A01G508700.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7A:+:696552673..696553762
Molecular Weight (calculated)
35070.4 Da
IEP (calculated)
9.913
GRAVY (calculated)
-0.565
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEQWMIGQT SLSLSLNVGG PTARRGAPPV SKVLVEEDFM SSRKNHEVEA LEAELRRVGE ENRRLSDMLR ALVAKYADLQ GKVSGMMAAA YHHQSWTTSE
101: GGSSASAIRK RPRSDSLDTA SRNPSPPLTA AGSSGRLAVS VTVGPDQAEC TSVQEPCNSK RVHADEVKAS RVSKLYVHAD PSDLSLVVKD GYQWRKYGQK
201: VTKDNPCPRA YFRCSFAPSC QVKKKVQRSA EDKTVLVATY DGDHNHAPPP KQQSSSSRKS GDAAAVRVSA APVLAQQQRK QEASTAEQVA DRKNLVEQMA
301: ATLTRDPVFK AALVSALSGR IPVA
101: GGSSASAIRK RPRSDSLDTA SRNPSPPLTA AGSSGRLAVS VTVGPDQAEC TSVQEPCNSK RVHADEVKAS RVSKLYVHAD PSDLSLVVKD GYQWRKYGQK
201: VTKDNPCPRA YFRCSFAPSC QVKKKVQRSA EDKTVLVATY DGDHNHAPPP KQQSSSSRKS GDAAAVRVSA APVLAQQQRK QEASTAEQVA DRKNLVEQMA
301: ATLTRDPVFK AALVSALSGR IPVA
001: MDYDPNTNPF DLHFSGKLPK REVSASASKV VEKKWLVKDE KRNMLQDEIN RVNSENKKLT EMLARVCEKY YALNNLMEEL QSRKSPESVN FQNKQLTGKR
101: KQELDEFVSS PIGLSLGPIE NITNDKATVS TAYFAAEKSD TSLTVKDGYQ WRKYGQKITR DNPSPRAYFR CSFSPSCLVK KKVQRSAEDP SFLVATYEGT
201: HNHTGPHASV SRTVKLDLVQ GGLEPVEEKK ERGTIQEVLV QQMASSLTKD PKFTAALATA ISGRLIEHSR T
101: KQELDEFVSS PIGLSLGPIE NITNDKATVS TAYFAAEKSD TSLTVKDGYQ WRKYGQKITR DNPSPRAYFR CSFSPSCLVK KKVQRSAEDP SFLVATYEGT
201: HNHTGPHASV SRTVKLDLVQ GGLEPVEEKK ERGTIQEVLV QQMASSLTKD PKFTAALATA ISGRLIEHSR T
Arabidopsis Description
WRKY60Probable WRKY transcription factor 60 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.