Factsheet for Solyc03g116890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116890.2.1
Solyc06g068460.2.1
Solyc08g067340.2.1
Solyc08g067360.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80840.1	Solyc03g116890.2.1	AT1G80840.1	16603654
AT1G80840.1	Solyc06g068460.2.1	AT1G80840.1	16603654
AT1G80840.1	Solyc08g067340.2.1	AT2G25000.1	16603654
AT1G80840.1	Solyc08g067360.2.1	AT2G25000.1	16603654
AT1G80840.1	Solyc08g067340.2.1	AT4G31800.1	16603654
AT1G80840.1	Solyc08g067360.2.1	AT4G31800.1	16603654
AT1G80840.1	Solyc08g067340.2.1	AT4G31800.1	18776063
AT1G80840.1	Solyc08g067360.2.1	AT4G31800.1	18776063
AT1G80840.1	Solyc08g067340.2.1	AT4G31800.1	21798944
AT1G80840.1	Solyc08g067360.2.1	AT4G31800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051047	Potato	nucleus	89.14	87.89
KRH23643	Soybean	nucleus	53.43	60.52
VIT_09s0018g00240.t01	Wine grape	nucleus	53.71	60.45
GSMUA_Achr7P19340_001	Banana	nucleus	31.43	57.29
KRH47344	Soybean	nucleus	50.86	57.23
Solyc12g042590.1.1	Tomato	nucleus	35.14	56.94
KRH44560	Soybean	nucleus	50.0	55.91
Solyc06g068460.2.1	Tomato	nucleus	57.43	55.83
Bra008435.1-P	Field mustard	nucleus	46.0	55.52
CDY22299	Canola	nucleus	45.71	55.17
CDY67287	Canola	nucleus	45.71	55.17
KRH09652	Soybean	nucleus	52.0	55.15
AT1G80840.1	Thale cress	nucleus	46.29	53.64
CDX88573	Canola	nucleus	45.43	52.82
Bra003588.1-P	Field mustard	nucleus	44.29	52.19
CDX67971	Canola	nucleus	44.0	51.85
Bra035148.1-P	Field mustard	nucleus	44.29	51.67
CDX87347	Canola	nucleus	44.29	51.67
CDX79347	Canola	nucleus	43.43	51.01
GSMUA_Achr2P05100_001	Banana	nucleus	26.86	49.47
Solyc08g067340.2.1	Tomato	nucleus	35.14	48.62
Solyc08g067360.2.1	Tomato	nucleus	35.43	48.06
GSMUA_Achr10P...	Banana	nucleus	31.71	47.84
GSMUA_Achr5P16460_001	Banana	nucleus	31.71	47.23
GSMUA_Achr11P...	Banana	nucleus	32.57	46.53
GSMUA_Achr3P13440_001	Banana	nucleus	35.43	45.09
GSMUA_Achr7P05200_001	Banana	nucleus	35.14	43.93
GSMUA_Achr10P...	Banana	nucleus	34.86	42.36
GSMUA_Achr7P16090_001	Banana	endoplasmic reticulum, nucleus, plastid	26.86	42.15
HORVU5Hr1G065380.2	Barley	nucleus	20.86	41.95
GSMUA_Achr1P10080_001	Banana	nucleus	37.43	39.1
GSMUA_Achr4P01930_001	Banana	extracellular, golgi	31.43	38.06
Zm00001d053746_P001	Maize	nucleus	33.71	36.76
Os02t0181300-01	Rice	nucleus	35.43	35.63
Zm00001d020492_P001	Maize	nucleus	30.57	35.43
TraesCS7B01G418500.2	Wheat	nucleus	32.86	34.95
TraesCS7D01G497400.1	Wheat	nucleus	32.57	34.86
Zm00001d046805_P001	Maize	nucleus	34.86	34.76
Os06t0649000-01	Rice	nucleus	33.43	34.72
Zm00001d036726_P001	Maize	nucleus	34.0	34.59
TraesCS6A01G146900.1	Wheat	nucleus	34.57	34.57
Os09t0417600-02	Rice	nucleus	32.29	34.56
TraesCS6D01G136200.1	Wheat	nucleus	34.29	34.48
HORVU6Hr1G028790.1	Barley	nucleus	34.57	34.28
TraesCS7A01G508800.1	Wheat	nucleus	32.0	34.25
TraesCS6B01G175100.2	Wheat	nucleus	34.57	34.08
EER90124	Sorghum	nucleus	33.14	33.92
EES04642	Sorghum	nucleus	35.14	33.79
EER98905	Sorghum	nucleus, plastid	31.43	33.64
HORVU7Hr1G113830.1	Barley	nucleus	30.57	33.54
TraesCS5B01G224000.1	Wheat	nucleus	31.71	33.53
TraesCS7B01G418400.1	Wheat	nucleus	31.14	33.44
TraesCS7D01G497800.1	Wheat	nucleus	31.14	33.44
TraesCS7A01G508700.1	Wheat	nucleus	30.86	33.33
TraesCS5D01G232800.1	Wheat	nucleus	31.43	33.23
TraesCS7B01G419400.1	Wheat	nucleus	30.29	32.92
Zm00001d015515_P001	Maize	nucleus	32.57	32.85
TraesCS5A01G225500.1	Wheat	nucleus	25.43	32.84
TraesCS5D01G232700.1	Wheat	nucleus	25.43	32.84
EER88729	Sorghum	nucleus	32.57	32.76
TraesCS7D01G497700.1	Wheat	nucleus	30.57	32.62
Zm00001d020495_P001	Maize	nucleus	24.57	32.33
TraesCS5A01G225600.1	Wheat	nucleus	30.0	31.72
TraesCS5B01G224100.1	Wheat	nucleus	29.71	31.52
TraesCS7B01G418600.1	Wheat	nucleus	26.0	31.49
TraesCS7A01G509000.1	Wheat	nucleus	30.57	30.75
KXG35639	Sorghum	nucleus	25.14	29.83
TraesCS7D01G497300.1	Wheat	plastid	31.43	29.57
Zm00001d005749_P001	Maize	nucleus	29.14	29.06
TraesCS5D01G232900.1	Wheat	nucleus	30.29	28.57
HORVU5Hr1G065420.15	Barley	nucleus	31.14	27.88
HORVU7Hr1G113850.4	Barley	nucleus, plastid	32.0	27.59
Os09t0417800-01	Rice	nucleus	24.57	27.04
Solyc02g032950.2.1	Tomato	nucleus	27.71	19.48
Solyc05g007110.2.1	Tomato	nucleus	20.0	17.86
Solyc02g080890.2.1	Tomato	nucleus	27.71	17.64
Solyc01g104550.2.1	Tomato	nucleus	23.43	17.26
Solyc02g067430.2.1	Tomato	nucleus	21.43	17.05
Solyc03g113120.2.1	Tomato	nucleus	22.86	15.27
Solyc07g051840.2.1	Tomato	nucleus	27.14	15.06
Solyc06g070990.2.1	Tomato	nucleus	22.86	12.33

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4BLJ1	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF3	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc03g116890.2
EnsemblPlants:Solyc03g116890.2.1	UniParc:UPI0002769107	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

Probable WRKY transcription factor 40 [Source:Projected from Arabidopsis thaliana (AT1G80840) UniProtKB/Swiss-Prot;Acc:Q9SAH7]

Coordinates

chr3:-:66139861..66142290

Molecular Weight (calculated)

39184.5 Da

IEP (calculated)

8.986

GRAVY (calculated)

-0.933

Length

350 amino acids

Sequence
(BLAST)

001: MEFTSLVDTS LDLNFRPLRV SDELPKQEVE SNFIGLGRDL VPVKDEASNL IEELNRVNAE NKKLTEMLTV MCQNYNSLRN QLTEYMSKQN SSTSGADQDQ
101: NSDGSKKIKI ENNNNNNNNN EIVKSSVQVL NSESSSSDED SSTKKPREEH IKTKTSRVYM RTEPSDTSLI VKDGYQWRKY GQKVTRDNPS PRAYFKCSFA
201: PTCPVKKKVQ RSVEDQSILV ATYEGEHNHS KVDTAGPVTT TSPSSRFNPK NNTYAAAVMP RQTLTLDLAE PKTLQNDIKK VHSITSTSSA SGQKRKSPGT
301: DQQQQNRPEF QHFLIEQMAS SLTKDPSFQA ALAAAISGKF LQNNSNTKDK

Best Arabidopsis Sequence Match ( AT1G80840.1 )
(BLAST)

001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK

Arabidopsis Description

WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.