Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G225600.1 | Wheat | nucleus | 92.12 | 91.84 |
| TraesCS5D01G232900.1 | Wheat | nucleus | 91.52 | 81.4 |
| TraesCS5B01G224000.1 | Wheat | nucleus | 80.61 | 80.36 |
| HORVU5Hr1G065420.15 | Barley | nucleus | 81.21 | 68.54 |
| Os09t0417600-02 | Rice | nucleus | 66.67 | 67.28 |
| EER98905 | Sorghum | nucleus, plastid | 62.73 | 63.3 |
| Zm00001d020492_P001 | Maize | nucleus | 57.27 | 62.58 |
| Zm00001d005749_P001 | Maize | nucleus | 56.06 | 52.71 |
| Bra019123.1-P | Field mustard | nucleus | 26.67 | 45.36 |
| Solyc12g042590.1.1 | Tomato | nucleus | 27.27 | 41.67 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 39.09 | 41.48 |
| PGSC0003DMT400073710 | Potato | nucleus | 26.36 | 40.09 |
| KRH47344 | Soybean | nucleus | 37.58 | 39.87 |
| KRH44560 | Soybean | nucleus | 37.27 | 39.3 |
| CDY22299 | Canola | nucleus | 34.24 | 38.97 |
| Bra008435.1-P | Field mustard | nucleus | 34.24 | 38.97 |
| KRH23643 | Soybean | nucleus | 36.36 | 38.84 |
| CDY67287 | Canola | nucleus | 33.94 | 38.62 |
| Bra003588.1-P | Field mustard | nucleus | 34.55 | 38.38 |
| CDX67971 | Canola | nucleus | 34.55 | 38.38 |
| Bra035148.1-P | Field mustard | nucleus | 34.85 | 38.33 |
| CDX87347 | Canola | nucleus | 34.85 | 38.33 |
| AT1G80840.1 | Thale cress | nucleus | 34.85 | 38.08 |
| GSMUA_Achr4P01930_001 | Banana | extracellular, golgi | 33.33 | 38.06 |
| CDX88573 | Canola | nucleus | 34.55 | 37.87 |
| CDX79347 | Canola | nucleus | 33.94 | 37.58 |
| CDX72327 | Canola | nucleus | 31.52 | 36.49 |
| KRH09652 | Soybean | nucleus | 36.36 | 36.36 |
| PGSC0003DMT400019058 | Potato | nucleus | 28.48 | 36.02 |
| Solyc08g067340.2.1 | Tomato | nucleus | 27.27 | 35.57 |
| KRH15674 | Soybean | nucleus | 30.3 | 35.46 |
| CDX75196 | Canola | nucleus | 30.3 | 35.34 |
| KRH61669 | Soybean | nucleus | 23.33 | 35.0 |
| Solyc08g067360.2.1 | Tomato | nucleus | 27.27 | 34.88 |
| PGSC0003DMT400019061 | Potato | nucleus | 26.67 | 34.78 |
| TraesCS7B01G418400.1 | Wheat | nucleus | 34.24 | 34.66 |
| TraesCS7B01G419400.1 | Wheat | nucleus | 33.64 | 34.47 |
| PGSC0003DMT400073396 | Potato | nucleus | 37.27 | 34.17 |
| Bra010220.1-P | Field mustard | nucleus | 31.52 | 33.77 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 32.42 | 33.75 |
| TraesCS7B01G418500.2 | Wheat | nucleus | 33.64 | 33.74 |
| Solyc06g068460.2.1 | Tomato | nucleus | 36.67 | 33.61 |
| CDY39879 | Canola | nucleus | 30.91 | 33.22 |
| AT2G25000.1 | Thale cress | nucleus | 27.27 | 33.21 |
| AT4G31800.1 | Thale cress | nucleus | 30.91 | 32.9 |
| Bra011299.1-P | Field mustard | nucleus | 30.91 | 32.18 |
| CDX68787 | Canola | nucleus | 30.91 | 31.97 |
| TraesCS7B01G418600.1 | Wheat | nucleus | 27.88 | 31.83 |
| KRH05350 | Soybean | nucleus | 29.39 | 31.09 |
| PGSC0003DMT400051047 | Potato | nucleus | 32.73 | 30.42 |
| Bra023983.1-P | Field mustard | nucleus | 31.21 | 29.86 |
| CDY70096 | Canola | nucleus | 31.21 | 29.86 |
| Solyc03g116890.2.1 | Tomato | nucleus | 31.52 | 29.71 |
| TraesCS6B01G175100.2 | Wheat | nucleus | 31.82 | 29.58 |
| KRH52329 | Soybean | nucleus | 25.15 | 26.86 |
| TraesCS3B01G130000.1 | Wheat | nucleus | 23.03 | 15.51 |
| TraesCS3B01G199000.2 | Wheat | nucleus | 25.45 | 14.48 |
| TraesCS1B01G434300.1 | Wheat | nucleus | 24.24 | 12.78 |
| TraesCS6B01G357600.1 | Wheat | nucleus | 20.3 | 11.96 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 |
| PANTHER:PTHR31429 | PANTHER:PTHR31429:SF3 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS5B01G224100 | EnsemblPlants:TraesCS5B01G224100.1 |
| InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5B:+:399274433..399275737
Molecular Weight (calculated)
35641.0 Da
IEP (calculated)
7.830
GRAVY (calculated)
-0.593
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTARRSPVC LDLMVGLPMV CEPSSARCTG MRAQADIASS ACGRATSMTS SEANKIMEAK FTEVTEENRR LTEMIGYLYA NSQNFARQSP EGEGEQPAST
101: AASPTSPVGK KRSRESMDTS DSGDVNSDKK MGTAEAEHID VESPLSNGTC RRIKVKRVCT RIDPSDTSLV VKDGYQWRKY GQKVTRDNPS PRAYFRCAFA
201: PSCPVKKKVQ RSAEDSSVVE ATYEGEHNHP RPTRAGELPS CATQGGGSVP CSISINSSGP TITLDLTKNG GGVQVVEAGE AQPDLKKVCR EVASPEFRAA
301: LVEQMARELT GDRKFTDALA AAILRKLPDY
101: AASPTSPVGK KRSRESMDTS DSGDVNSDKK MGTAEAEHID VESPLSNGTC RRIKVKRVCT RIDPSDTSLV VKDGYQWRKY GQKVTRDNPS PRAYFRCAFA
201: PSCPVKKKVQ RSAEDSSVVE ATYEGEHNHP RPTRAGELPS CATQGGGSVP CSISINSSGP TITLDLTKNG GGVQVVEAGE AQPDLKKVCR EVASPEFRAA
301: LVEQMARELT GDRKFTDALA AAILRKLPDY
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.