Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_04s0008g05760.t01 | |
| VIT_09s0018g00240.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH23643 | Soybean | nucleus | 65.27 | 65.7 |
| KRH47344 | Soybean | nucleus | 65.27 | 65.27 |
| KRH44560 | Soybean | nucleus | 65.27 | 64.86 |
| KRH09652 | Soybean | nucleus | 64.31 | 60.61 |
| GSMUA_Achr7P19340_001 | Banana | nucleus | 35.37 | 57.29 |
| CDY22299 | Canola | nucleus | 52.73 | 56.55 |
| CDY67287 | Canola | nucleus | 52.73 | 56.55 |
| Bra008435.1-P | Field mustard | nucleus | 52.73 | 56.55 |
| Bra003588.1-P | Field mustard | nucleus | 53.38 | 55.89 |
| CDX67971 | Canola | nucleus | 53.05 | 55.56 |
| CDX88573 | Canola | nucleus | 53.7 | 55.48 |
| CDX79347 | Canola | nucleus | 52.73 | 55.03 |
| CDX87347 | Canola | nucleus | 52.73 | 54.67 |
| Bra035148.1-P | Field mustard | nucleus | 52.73 | 54.67 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 55.63 | 54.57 |
| AT1G80840.1 | Thale cress | nucleus | 52.73 | 54.3 |
| PGSC0003DMT400073396 | Potato | nucleus | 62.7 | 54.17 |
| Solyc06g068460.2.1 | Tomato | nucleus | 62.38 | 53.89 |
| Solyc03g116890.2.1 | Tomato | nucleus | 60.45 | 53.71 |
| PGSC0003DMT400051047 | Potato | nucleus | 60.45 | 52.96 |
| GSMUA_Achr2P05100_001 | Banana | nucleus | 32.15 | 52.63 |
| GSMUA_Achr10P... | Banana | nucleus | 39.23 | 52.59 |
| GSMUA_Achr5P16460_001 | Banana | nucleus | 38.59 | 51.06 |
| GSMUA_Achr11P... | Banana | nucleus | 37.94 | 48.16 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 41.8 | 46.43 |
| GSMUA_Achr10P... | Banana | nucleus | 42.44 | 45.83 |
| HORVU5Hr1G065380.2 | Barley | nucleus | 25.4 | 45.4 |
| GSMUA_Achr7P16090_001 | Banana | endoplasmic reticulum, nucleus, plastid | 31.51 | 43.95 |
| GSMUA_Achr3P13440_001 | Banana | nucleus | 38.59 | 43.64 |
| GSMUA_Achr4P01930_001 | Banana | extracellular, golgi | 39.87 | 42.91 |
| Zm00001d020492_P001 | Maize | nucleus | 41.16 | 42.38 |
| Os09t0417600-02 | Rice | nucleus | 42.77 | 40.67 |
| TraesCS5D01G232800.1 | Wheat | nucleus | 42.77 | 40.18 |
| TraesCS5B01G224000.1 | Wheat | nucleus | 42.77 | 40.18 |
| TraesCS5A01G225600.1 | Wheat | nucleus | 42.77 | 40.18 |
| EER98905 | Sorghum | nucleus, plastid | 41.8 | 39.76 |
| GSMUA_Achr1P10080_001 | Banana | nucleus | 42.44 | 39.4 |
| HORVU7Hr1G113830.1 | Barley | nucleus | 40.19 | 39.19 |
| TraesCS5B01G224100.1 | Wheat | nucleus | 41.48 | 39.09 |
| VIT_04s0008g05750.t01 | Wine grape | nucleus | 32.8 | 39.08 |
| Os02t0181300-01 | Rice | nucleus | 43.41 | 38.79 |
| TraesCS7B01G418400.1 | Wheat | nucleus | 40.51 | 38.65 |
| Zm00001d053746_P001 | Maize | nucleus | 39.87 | 38.63 |
| TraesCS7D01G497400.1 | Wheat | nucleus | 40.51 | 38.53 |
| TraesCS7B01G419400.1 | Wheat | nucleus | 39.87 | 38.51 |
| TraesCS7D01G497800.1 | Wheat | nucleus | 40.19 | 38.34 |
| TraesCS7B01G418500.2 | Wheat | nucleus | 40.51 | 38.3 |
| TraesCS7A01G508700.1 | Wheat | nucleus | 39.87 | 38.27 |
| TraesCS7A01G508800.1 | Wheat | nucleus | 39.87 | 37.92 |
| TraesCS7D01G497700.1 | Wheat | nucleus | 39.87 | 37.8 |
| EES04642 | Sorghum | nucleus | 43.41 | 37.09 |
| TraesCS6A01G146900.1 | Wheat | nucleus | 41.48 | 36.86 |
| HORVU6Hr1G028790.1 | Barley | nucleus | 41.8 | 36.83 |
| TraesCS6D01G136200.1 | Wheat | nucleus | 41.16 | 36.78 |
| Zm00001d036726_P001 | Maize | nucleus | 40.51 | 36.63 |
| Os06t0649000-01 | Rice | nucleus | 39.55 | 36.5 |
| TraesCS6B01G175100.2 | Wheat | nucleus | 41.48 | 36.34 |
| TraesCS5D01G232900.1 | Wheat | nucleus | 42.77 | 35.85 |
| TraesCS5D01G232700.1 | Wheat | nucleus | 31.19 | 35.79 |
| TraesCS7B01G418600.1 | Wheat | nucleus | 33.12 | 35.64 |
| Zm00001d015515_P001 | Maize | nucleus | 39.55 | 35.45 |
| EER90124 | Sorghum | nucleus | 38.91 | 35.38 |
| TraesCS7A01G509000.1 | Wheat | nucleus | 39.55 | 35.34 |
| EER88729 | Sorghum | nucleus | 39.55 | 35.34 |
| Zm00001d020495_P001 | Maize | nucleus | 30.23 | 35.34 |
| Zm00001d046805_P001 | Maize | nucleus | 39.87 | 35.33 |
| TraesCS5A01G225500.1 | Wheat | nucleus | 30.55 | 35.06 |
| TraesCS7D01G497300.1 | Wheat | plastid | 41.16 | 34.41 |
| KXG35639 | Sorghum | nucleus | 32.48 | 34.24 |
| Zm00001d005749_P001 | Maize | nucleus | 38.59 | 34.19 |
| HORVU5Hr1G065420.15 | Barley | nucleus | 42.12 | 33.5 |
| Os09t0417800-01 | Rice | nucleus | 33.76 | 33.02 |
| HORVU7Hr1G113850.4 | Barley | nucleus, plastid | 40.84 | 31.28 |
| VIT_10s0116g01200.t01 | Wine grape | nucleus | 33.12 | 19.25 |
| VIT_07s0005g02570.t01 | Wine grape | nucleus | 31.19 | 19.17 |
| VIT_19s0090g00840.t01 | Wine grape | nucleus | 32.48 | 18.33 |
| VIT_12s0059g00880.t01 | Wine grape | nucleus | 34.73 | 18.21 |
| VIT_12s0055g00340.t01 | Wine grape | nucleus | 26.69 | 17.04 |
| VIT_14s0108g00120.t01 | Wine grape | nucleus | 27.33 | 16.93 |
| VIT_01s0026g01730.t01 | Wine grape | nucleus | 29.58 | 15.49 |
| VIT_17s0000g05810.t01 | Wine grape | nucleus | 28.62 | 14.71 |
Protein Annotations
| EntrezGene:100253480 | wikigene:100253480 | MapMan:15.5.22 | Gene3D:2.20.25.80 | ProteinID:ADU02585 | ProteinID:ADU02585.1 |
| EMBL:AM481334 | ProteinID:CAN66337 | ProteinID:CAN66337.1 | ProteinID:CCB49655 | ProteinID:CCB49655.1 | UniProt:F6HBV8 |
| EMBL:FN595513 | GO:GO:0002237 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009751 | GO:GO:0009987 |
| GO:GO:0010200 | GO:GO:0031347 | GO:GO:0042742 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0045892 |
| GO:GO:0050832 | EMBL:GU270834 | InterPro:IPR003657 | InterPro:IPR036576 | EntrezGene:LOC100253480 | wikigene:LOC100253480 |
| PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF3 | SMART:SM00774 | SUPFAM:SSF118290 |
| TIGR:TC66456 | UniParc:UPI00015CBAEE | ArrayExpress:VIT_09s0018g00240 | EnsemblPlantsGene:VIT_09s0018g00240 | EnsemblPlants:VIT_09s0018g00240.t01 | unigene:Vvi.19750 |
| InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr9:+:16094245..16096198
Molecular Weight (calculated)
34377.2 Da
IEP (calculated)
8.839
GRAVY (calculated)
-0.764
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMDSSNWMA ASLDLNANPL RLFDDTPKKE VQDDFTGLGL KVVSLKEEET GVLVEKLNQV NAENRKLTEM LTVMCENYNA LRSHVMEYIS KNPERESPSS
101: RKRKAESSNN NSNNNGVVGN SESSSSDEDS FKKPREETIK AKISRVYTRT DASDTSLVVK DGYQWRKYGQ KVTRDNPSPR AYFKCSFAPS CPVKKKVQRS
201: VEDQSILVAT YEGEHNHPHP GRIEPTSGAN RSVNLGSVPC ASSLSSSGPA ITLDLTKPKS NSDAKASKSP ELHHFLVEQM ASSLTKDPSF KAALAAAISG
301: RILHHNQTEK W
101: RKRKAESSNN NSNNNGVVGN SESSSSDEDS FKKPREETIK AKISRVYTRT DASDTSLVVK DGYQWRKYGQ KVTRDNPSPR AYFKCSFAPS CPVKKKVQRS
201: VEDQSILVAT YEGEHNHPHP GRIEPTSGAN RSVNLGSVPC ASSLSSSGPA ITLDLTKPKS NSDAKASKSP ELHHFLVEQM ASSLTKDPSF KAALAAAISG
301: RILHHNQTEK W
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.