Factsheet for VIT_12s0059g00880.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038852	Potato	nucleus	60.71	64.63
GSMUA_Achr3P31130_001	Banana	mitochondrion, nucleus	35.41	60.0
VIT_10s0116g01200.t01	Wine grape	nucleus	53.96	59.81
Solyc07g051840.2.1	Tomato	nucleus	62.56	58.8
GSMUA_Achr5P16750_001	Banana	nucleus	47.72	58.23
GSMUA_Achr3P03090_001	Banana	nucleus	36.93	57.33
KRH22585	Soybean	nucleus	58.85	56.84
GSMUA_Achr10P...	Banana	nucleus	46.88	56.05
GSMUA_Achr6P13630_001	Banana	nucleus	48.06	54.39
KRH25355	Soybean	nucleus	56.16	54.23
GSMUA_Achr2P15200_001	Banana	nucleus	48.57	54.14
KRH56160	Soybean	nucleus	56.83	53.66
GSMUA_Achr6P05880_001	Banana	nucleus	41.99	52.31
GSMUA_Achr10P...	Banana	nucleus	44.69	51.96
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	38.62	46.93
VIT_19s0090g00840.t01	Wine grape	nucleus	42.33	45.55
TraesCS3B01G199000.2	Wheat	nucleus	40.13	41.03
TraesCS3A01G167200.1	Wheat	nucleus	39.63	40.87
Zm00001d039245_P001	Maize	nucleus	37.27	40.85
VIT_07s0005g02570.t01	Wine grape	nucleus	34.57	40.51
EES02155	Sorghum	nucleus	38.62	40.18
TraesCS3D01G173300.2	Wheat	plastid	39.8	37.11
HORVU3Hr1G033740.2	Barley	nucleus, plastid	39.12	36.88
VIT_04s0008g05750.t01	Wine grape	nucleus	15.85	36.02
VIT_09s0018g00240.t01	Wine grape	nucleus	18.21	34.73
VIT_04s0008g05760.t01	Wine grape	nucleus	17.71	33.12
VIT_14s0108g00120.t01	Wine grape	nucleus	26.14	30.88
VIT_12s0055g00340.t01	Wine grape	nucleus	23.27	28.34
VIT_01s0026g01730.t01	Wine grape	nucleus	27.99	27.95
VIT_17s0000g05810.t01	Wine grape	nucleus	27.82	27.27
Os01t0246700-01	Rice	nucleus	18.55	26.63

Protein Annotations

EntrezGene:100243099	wikigene:100243099	MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:AM446201	ProteinID:CAN65218
ProteinID:CAN65218.1	ProteinID:CCB51973	ProteinID:CCB51973.1	ncoils:Coil	UniProt:F6HIC7	EMBL:FN595765
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	EntrezGene:LOC100243099	wikigene:LOC100243099	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429
PANTHER:PTHR31429:SF21	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002108AB8	ArrayExpress:VIT_12s0059g00880	EnsemblPlantsGene:VIT_12s0059g00880
EnsemblPlants:VIT_12s0059g00880.t01	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002269696	RefSeq:XP_002269696.2	SEG:seg

Description

No Description!

Coordinates

chr12:-:5678804..5681082

Molecular Weight (calculated)

64118.7 Da

IEP (calculated)

6.943

GRAVY (calculated)

-0.665

Length

593 amino acids

Sequence
(BLAST)

001: MAKGSGLSFG SDPIFFLHKP IVINSFPEDH SKRFAAMDAT KNQSTTTIQF PVNLNCAHPD SPVPDDEKPR IVDEMDFFAD KNRDSKPPTT DNKNSPYYFN
101: VNTGLHLLTA NTSSDQSMVD DGMSPPNVDD KRVKNELVVL QAEIERMHAE NERLRSMLNQ VTNNYNALQV HMVALMQDQK AENNEEHDQK HSGNNNGGVV
201: VPRQFIDLGL AAKAEVEEPS LSSSEGRSGD RSGSPINNGE VGSKELELRK NEKKEYSSGI GREESPDQGS QWGANKVPRL NPSKNVDQTE ATMRKARVSV
301: RARSEAPMIT DGCQWRKYGQ KMAKGNPCPR AYYRCTMAAG CPVRKQVQRC AEDRSILITT YEGNHNHPLP PAAMAMASTT SSAARMLLSG SMPSADGLMN
401: SNFLARTVLP CSSSMATISA SAPFPTVTLD LTQNPNPLQF QRPPSQFYVP SPNPTQNLAG PAAATPSSLL PQIFNQALYN QSKFSGLQMS QDMEAAQLPT
501: HHQPSSQQQS QQNSLAETVS AATAAITADP NFTAALAAAI TSIIGGAQPQ PNSSTNNNAN TTVPTTSNSG NITTSNSNSN GSNKLCNSKF PGN

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.