CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX96624
CDY01355
CDY31868
CDY33645
CDY39879

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02620.1	CDX96624	AT1G20770.1	21798944
AT4G02620.1	CDY01355	AT1G20770.1	21798944
AT4G02620.1	CDY31868	AT1G20770.1	21798944
AT4G02620.1	CDY33645	AT1G20770.1	21798944
AT4G02620.1	CDY39879	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018537.1-P	Field mustard	cytosol	34.75	100.0
CDX90929	Canola	cytosol	90.07	99.22
CDY21901	Canola	cytosol	90.07	99.22
CDY22067	Canola	cytosol	90.07	99.22
CDY18010	Canola	cytosol	89.36	98.44
AT4G02620.1	Thale cress	cytosol	87.23	96.09
VIT_05s0062g00210.t01	Wine grape	cytosol	78.72	85.38
Solyc02g068450.2.1	Tomato	cytosol, plastid	68.79	85.09
KRH42449	Soybean	cytosol	78.01	84.62
KRH58554	Soybean	cytosol	78.01	84.62
GSMUA_Achr1P15220_001	Banana	cytosol	77.31	83.85
EES06054	Sorghum	cytosol	77.31	83.85
EER97697	Sorghum	cytosol	77.31	83.85
PGSC0003DMT400024361	Potato	cytosol	76.6	83.08
Zm00001d007118_P003	Maize	cytosol	76.6	83.08
GSMUA_Achr1P17510_001	Banana	cytosol	75.89	82.31
Os02t0824700-01	Rice	nucleus, plasma membrane	75.89	82.31
Os04t0137500-00	Rice	cytosol	75.89	82.31
HORVU3Hr1G047510.1	Barley	vacuole	75.18	81.54
TraesCS3A01G201100.1	Wheat	unclear	75.18	81.54
TraesCS3B01G224800.1	Wheat	cytosol	75.18	81.54
TraesCS3D01G204000.1	Wheat	cytosol	75.18	81.54

Protein Annotations

MapMan:24.1.1.2.6	Gene3D:3.40.50.10580	GO:A0A078DPP0	InterPro:ATPase_V1-cplx_f_g_su	InterPro:ATPase_V1-cplx_fsu_euk	InterPro:ATPase_V1_fsu_sf
EnsemblPlants:CDX91295	ProteinID:CDX91295	ProteinID:CDX91295.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015991	GO:GO:0016020	GO:GO:0016787
GO:GO:0033180	GO:GO:0034220	GO:GO:0046961	EnsemblPlantsGene:GSBRNA2T00152545001	InterPro:IPR036906	PFAM:PF01990
PIRSF:PIRSF015945	PANTHER:PTHR13861	PANTHER:PTHR13861:SF6	SUPFAM:SSF159468	TIGRFAMs:TIGR01101	TMHMM:TMhelix
UniParc:UPI0004EDCF8A	:	:	:	:	:

Description

BnaC02g27060D

Coordinates

chrLK031866:-:1274198..1275578

Molecular Weight (calculated)

15689.9 Da

IEP (calculated)

7.409

GRAVY (calculated)

0.096

Length

141 amino acids

Sequence
(BLAST)

001: MAGRASIPAR NSALIAMIAD ELCPSVSYFV SCVLDTVVGF LMAGVGNVDI RRKTNYRIVD SKTTVRQIED AFKEFSSRDD IAIILISQYV ANMIRFLVDS
101: YNKPVPAILE IPSKDHPYDP AHDSVLSRVK YLFSAESVSQ R

Best Arabidopsis Sequence Match ( AT4G02620.1 )
(BLAST)

001: MAGRATIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK EFSARDDIAI ILLSQYIANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR

Arabidopsis Description

VHA-FV-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:A0A178V4M8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.