Factsheet for VIT_05s0062g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_04s0008g05760.t01
VIT_18s0122g01060.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02620.1	VIT_18s0122g01060.t01	AT1G20770.1	21798944
AT4G02620.1	VIT_03s0038g04360.t01	AT1G71230.1	21798944
AT4G02620.1	VIT_04s0008g05760.t01	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g068450.2.1	Tomato	cytosol, plastid	83.08	94.74
Bra018537.1-P	Field mustard	cytosol	35.38	93.88
PGSC0003DMT400024361	Potato	cytosol	91.54	91.54
GSMUA_Achr1P17510_001	Banana	cytosol	91.54	91.54
Os04t0137500-00	Rice	cytosol	90.77	90.77
Os02t0824700-01	Rice	nucleus, plasma membrane	90.77	90.77
KRH58554	Soybean	cytosol	90.77	90.77
KRH42449	Soybean	cytosol	90.77	90.77
EES06054	Sorghum	cytosol	90.77	90.77
GSMUA_Achr1P15220_001	Banana	cytosol	90.0	90.0
EER97697	Sorghum	cytosol	89.23	89.23
Zm00001d007118_P003	Maize	cytosol	88.46	88.46
CDY22067	Canola	cytosol	86.15	87.5
CDY21901	Canola	cytosol	86.15	87.5
CDX90929	Canola	cytosol	86.15	87.5
Bra036253.1-P	Field mustard	cytosol	86.15	87.5
Bra000871.1-P	Field mustard	cytosol	86.15	87.5
CDY18010	Canola	cytosol	85.38	86.72
AT4G02620.1	Thale cress	cytosol	84.62	85.94
HORVU3Hr1G047510.1	Barley	vacuole	85.38	85.38
TraesCS3A01G201100.1	Wheat	unclear	85.38	85.38
TraesCS3B01G224800.1	Wheat	cytosol	85.38	85.38
TraesCS3D01G204000.1	Wheat	cytosol	85.38	85.38
CDX91295	Canola	endoplasmic reticulum	85.38	78.72

Protein Annotations

EntrezGene:100267411	wikigene:100267411	MapMan:24.1.1.2.6	Gene3D:3.40.50.10580	UniProt:A5B4N7	EMBL:AM446457
InterPro:ATPase_V1-cplx_f_g_su	InterPro:ATPase_V1-cplx_fsu_euk	InterPro:ATPase_V1_fsu_sf	ProteinID:CAN63147	ProteinID:CAN63147.1	ProteinID:CBI39382
ProteinID:CBI39382.3	EMBL:FN596745	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020
GO:GO:0016787	GO:GO:0033180	GO:GO:0034220	GO:GO:0042625	GO:GO:0046961	InterPro:IPR036906
EntrezGene:LOC100267411	wikigene:LOC100267411	PFAM:PF01990	PIRSF:PIRSF015945	PANTHER:PTHR13861	PANTHER:PTHR13861:SF6
SUPFAM:SSF159468	TIGR:TC56678	TIGRFAMs:TIGR01101	UniParc:UPI0001520066	ArrayExpress:VIT_05s0062g00210	EnsemblPlantsGene:VIT_05s0062g00210
EnsemblPlants:VIT_05s0062g00210.t01	unigene:Vvi.11413	RefSeq:XP_002268061	RefSeq:XP_002268061.1	:	:

Description

V-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:A5B4N7]

Coordinates

chr5:-:18363054..18370074

Molecular Weight (calculated)

14404.4 Da

IEP (calculated)

7.669

GRAVY (calculated)

-0.034

Length

130 amino acids

Sequence
(BLAST)

001: MAGRAQIPTK SSALIAMIAD EDTITGFLLA GVGNVDLRRK TNYLIVDSKT TVKQIEDAFK EFTTKEDIAI ILISQYVANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVASGRR

Best Arabidopsis Sequence Match ( AT4G02620.1 )
(BLAST)

001: MAGRATIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK EFSARDDIAI ILLSQYIANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR

Arabidopsis Description

VHA-FV-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:A0A178V4M8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.