Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58554 | Soybean | cytosol | 100.0 | 100.0 |
| Solyc02g068450.2.1 | Tomato | cytosol, plastid | 81.54 | 92.98 |
| VIT_05s0062g00210.t01 | Wine grape | cytosol | 90.77 | 90.77 |
| PGSC0003DMT400024361 | Potato | cytosol | 90.0 | 90.0 |
| Bra018537.1-P | Field mustard | cytosol | 33.85 | 89.8 |
| GSMUA_Achr1P17510_001 | Banana | cytosol | 89.23 | 89.23 |
| GSMUA_Achr1P15220_001 | Banana | cytosol | 89.23 | 89.23 |
| EES06054 | Sorghum | cytosol | 89.23 | 89.23 |
| Os04t0137500-00 | Rice | cytosol | 88.46 | 88.46 |
| Os02t0824700-01 | Rice | nucleus, plasma membrane | 88.46 | 88.46 |
| Zm00001d007118_P003 | Maize | cytosol | 87.69 | 87.69 |
| EER97697 | Sorghum | cytosol | 87.69 | 87.69 |
| CDY22067 | Canola | cytosol | 85.38 | 86.72 |
| CDY21901 | Canola | cytosol | 85.38 | 86.72 |
| CDX90929 | Canola | cytosol | 85.38 | 86.72 |
| Bra036253.1-P | Field mustard | cytosol | 85.38 | 86.72 |
| Bra000871.1-P | Field mustard | cytosol | 85.38 | 86.72 |
| CDY18010 | Canola | cytosol | 84.62 | 85.94 |
| AT4G02620.1 | Thale cress | cytosol | 83.85 | 85.16 |
| HORVU3Hr1G047510.1 | Barley | vacuole | 84.62 | 84.62 |
| TraesCS3A01G201100.1 | Wheat | unclear | 84.62 | 84.62 |
| TraesCS3B01G224800.1 | Wheat | cytosol | 84.62 | 84.62 |
| TraesCS3D01G204000.1 | Wheat | cytosol | 84.62 | 84.62 |
| CDX91295 | Canola | endoplasmic reticulum | 84.62 | 78.01 |
Protein Annotations
| EntrezGene:100305531 | EntrezGene:100780523 | MapMan:24.1.1.2.6 | Gene3D:3.40.50.10580 | EMBL:ACUP02003269 | EMBL:ACUP02004804 |
| InterPro:ATPase_V1-cplx_f_g_su | InterPro:ATPase_V1-cplx_fsu_euk | InterPro:ATPase_V1_fsu_sf | EMBL:BT089174 | UniProt:C6SVI1 | EnsemblPlantsGene:GLYMA_08G090500 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006811 |
| GO:GO:0008150 | GO:GO:0015991 | GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0033180 |
| GO:GO:0034220 | GO:GO:0042625 | GO:GO:0046961 | InterPro:IPR036906 | EnsemblPlants:KRH42449 | ProteinID:KRH42449 |
| ProteinID:KRH42449.1 | ProteinID:KRH58554.1 | ProteinID:KRH58555.1 | PFAM:PF01990 | PIRSF:PIRSF015945 | PANTHER:PTHR13861 |
| PANTHER:PTHR13861:SF6 | SUPFAM:SSF159468 | TIGRFAMs:TIGR01101 | UniParc:UPI0001B1573B | : | : |
Description
hypothetical protein
Coordinates
chr8:+:6810003..6814069
Molecular Weight (calculated)
14543.5 Da
IEP (calculated)
6.532
GRAVY (calculated)
-0.065
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MANRVQIPTN NSALIAMIAD EDTVVGFLLA GVGNVDIRRK TNYLIVDSKT TVKQIEDAFK EFTTREDVAI VLISQYVANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF NTESVASGRR
101: KDHPYDPAHD SVLSRVKYLF NTESVASGRR
001: MAGRATIPAR NSALIAMIAD EDTVVGFLMA GVGNVDIRRK TNYLIVDSKT TVRQIEDAFK EFSARDDIAI ILLSQYIANM IRFLVDSYNK PVPAILEIPS
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR
101: KDHPYDPAHD SVLSRVKYLF SAESVSQR
Arabidopsis Description
VHA-FV-type proton ATPase subunit F [Source:UniProtKB/TrEMBL;Acc:A0A178V4M8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.