Factsheet for VIT_13s0064g00190.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017455	Potato	nucleus	55.49	64.6
Solyc01g087690.1.1	Tomato	nucleus	59.87	45.37
CDX85630	Canola	plastid	57.68	45.1
Bra008807.1-P	Field mustard	plastid	57.37	45.07
CDX91100	Canola	plastid	57.37	44.74
AT5G13730.1	Thale cress	plastid	58.62	44.63
CDY09826	Canola	plastid	57.99	44.15
GSMUA_Achr4P18530_001	Banana	plastid	53.6	36.54
Bra023430.1-P	Field mustard	plastid	53.92	23.66
VIT_08s0040g01560.t01	Wine grape	plastid	36.36	20.68
VIT_15s0024g00640.t01	Wine grape	plastid	34.8	19.3
VIT_16s0039g00660.t01	Wine grape	plastid	33.54	18.51
VIT_04s0008g00600.t01	Wine grape	plastid	29.47	16.76
VIT_16s0050g02520.t01	Wine grape	plastid	24.76	15.25

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.601.10	EntrezGene:100244848	wikigene:100244848	MapMan:15.6.2.1	ProteinID:CBI24961
ProteinID:CBI24961.3	UniProt:D7T380	EMBL:FN595509	GO:GO:0001053	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006352	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0016043
GO:GO:0016987	GO:GO:0071482	GO:GO:2000142	GO:GO:2001141	InterPro:IPR036388	EntrezGene:LOC100244848
wikigene:LOC100244848	PFAM:PF04539	PFAM:PF04542	PFAM:PF04545	PRINTS:PR00046	ScanProsite:PS00715
PANTHER:PTHR30603	PANTHER:PTHR30603:SF24	InterPro:RNA_pol_sigma-70_dom	InterPro:RNA_pol_sigma70	InterPro:RNA_pol_sigma70_r2	InterPro:RNA_pol_sigma70_r3
InterPro:RNA_pol_sigma70_r4	InterPro:RNA_pol_sigma_r2	InterPro:RNA_pol_sigma_r3/r4-like	SUPFAM:SSF88659	SUPFAM:SSF88946	TIGRFAMs:TIGR02937
UniParc:UPI0001BE23A3	ArrayExpress:VIT_13s0064g00190	EnsemblPlantsGene:VIT_13s0064g00190	EnsemblPlants:VIT_13s0064g00190.t01	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002272444
RefSeq:XP_002272444.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:21694107..21696850

Molecular Weight (calculated)

36590.4 Da

IEP (calculated)

9.330

GRAVY (calculated)

-0.371

Length

319 amino acids

Sequence
(BLAST)

001: MVEKWDGEEV HEVSFGAARS AVLTPREEAE FCLCLKEEAG LEAARRRIAE TREHEPTSNQ WAEAVGIKRS SLDKMLCNGR ESRERINQSY RRLVVSIAAR
101: YQGKGLSLQD LIQEGSIGLL RGAERFDPDR GYKLSTYVYW WIRQAIVRAI ANKSRIIRLP GSICEMVAKI AEARTVLSRR LRRLPTYDEI AEFIDVNVST
201: VRLVSERSRT PISVDQAVTS QGCMTLQEII PGPDETTPQK MVKRQLMKQE VERALNTLCE REAYILRLYF GINGETPLSF EEIGRLMKLS RERVRQINSI
301: ALSKLRQTSV VDYLKLYMM

Best Arabidopsis Sequence Match ( AT5G13730.1 )
(BLAST)

001: MATTIPTTAT ATMCPSPPVP TISPLLRTTH QCQPSPSLSS PFSIKLSTAL VCGDTTVDRV VDSSVMIKPE KWGIQSEKRR KRRRRRRVGY ERLEPEEEEN
101: AGVEAEAETI SVPVVGASRS GFLSRLEEVQ LCLYLKEGAK LENLGTSVEE NEMVSVLLAS GRGKKKRSAN EILCRRKEAR EKITRCYRRL VVSIATGYQG
201: KGLNLQDLIQ EGSIGLLRGA ERFDPDRGYK LSTYVYWWIK QAILRAIAHK SRLVKLPGSM WELTAKVAEA SNVLTRKLRR QPSCEEIAEH LNLNVSAVRL
301: AVERSRSPVS LDRVASQNGR MTLQEIVRGP DETRPEEMVK REHMKHEIEQ LLGSLTARES RVLGLYFGLN GETPMSFEEI GKSLKLSRER VRQINGIALK
401: KLRNVHNVND LKIYYSSSE

Arabidopsis Description

SIGDRNA polymerase sigma factor sigD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSL6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.