Factsheet for VIT_07s0129g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g06590.t01
VIT_07s0129g00270.t01
VIT_08s0040g01560.t01
VIT_09s0002g00720.t01
VIT_16s0039g00660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23070.1	VIT_16s0039g00660.t01	AT1G64860.1	22111690
AT2G23070.1	VIT_07s0129g00270.t01	AT2G23070.1	22111690
AT2G23070.1	VIT_08s0040g01560.t01	AT2G36990.1	22111690
AT2G23070.1	VIT_09s0002g00720.t01	AT3G14180.1	21798944
AT2G23070.1	VIT_06s0004g06590.t01	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04448	Soybean	nucleus	75.24	91.93
CDX76880	Canola	cytosol, mitochondrion	73.82	90.2
VIT_18s0001g09320.t01	Wine grape	cytosol	69.1	87.99
Solyc02g064700.2.1	Tomato	plastid	82.78	82.2
KRH58076	Soybean	endoplasmic reticulum	75.47	81.63
Bra032182.1-P	Field mustard	plastid	76.18	80.55
CDY38928	Canola	plastid	76.18	80.55
GSMUA_Achr6P34710_001	Banana	golgi, plasma membrane, vacuole	75.71	79.65
Bra039942.1-P	Field mustard	plastid	78.77	79.52
CDX89544	Canola	plastid	78.07	79.38
CDY49445	Canola	plastid	78.77	79.33
KRH58078	Soybean	cytosol	3.54	78.95
AT2G23070.1	Thale cress	plastid	79.48	78.01
HORVU4Hr1G030100.1	Barley	cytosol	16.75	77.17
VIT_07s0129g00410.t01	Wine grape	golgi, plasma membrane	72.41	75.8
GSMUA_Achr9P09590_001	Banana	mitochondrion, plastid	73.82	71.62
KXG37490	Sorghum	mitochondrion	66.27	68.37
Os03t0763000-01	Rice	plastid	65.33	67.89
Zm00001d034137_P001	Maize	plastid	61.32	66.33
TraesCS5B01G405700.1	Wheat	mitochondrion, plastid	63.92	65.62
TraesCS5A01G400900.1	Wheat	mitochondrion, plastid	63.68	65.53
TraesCS5D01G411100.1	Wheat	mitochondrion	63.44	65.13
HORVU5Hr1G097400.2	Barley	cytosol, mitochondrion, nucleus, plastid	63.92	63.32
Zm00001d032025_P001	Maize	mitochondrion	27.59	59.09
VIT_15s0045g00420.t01	Wine grape	cytosol	2.83	28.57
VIT_10s0003g01480.t01	Wine grape	cytosol	24.76	27.63
VIT_07s0005g02100.t01	Wine grape	cytosol	24.76	27.56
VIT_14s0066g01050.t01	Wine grape	cytosol	26.65	27.43
VIT_14s0060g00600.t01	Wine grape	cytosol	24.53	27.3
VIT_12s0028g01810.t01	Wine grape	cytosol	25.71	27.11
VIT_12s0035g01060.t01	Wine grape	cytosol	25.0	25.12
VIT_15s0048g02010.t01	Wine grape	cytosol, mitochondrion	25.94	23.5

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100262741	wikigene:100262741	MapMan:18.4.3.9.1	Gene3D:3.30.200.20	EMBL:AM440768
ProteinID:CAN71837	ProteinID:CAN71837.1	ProteinID:CBI33704	ProteinID:CBI33704.3	UniProt:D7TT82	EMBL:FN596246
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009791
GO:GO:0009987	GO:GO:0010019	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0040007
GO:GO:0040008	GO:GO:2000028	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100262741	wikigene:LOC100262741
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24054	PANTHER:PTHR24054:SF33
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC54031
UniParc:UPI0001983AE8	ArrayExpress:VIT_07s0129g00270	EnsemblPlantsGene:VIT_07s0129g00270	EnsemblPlants:VIT_07s0129g00270.t01	unigene:Vvi.11720	RefSeq:XP_002284333
RefSeq:XP_002284333.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:15540265..15554778

Molecular Weight (calculated)

49170.2 Da

IEP (calculated)

9.653

GRAVY (calculated)

-0.503

Length

424 amino acids

Sequence
(BLAST)

001: MAVRPLRFII SHRRLLAFSL RLPSSSSSHL SQSPPSLLVF HRLASSPAPL SHPQKSPPPP PPPPSHHRFA LSSLPETLAQ RIGKSVRRPG APSKARVYAD
101: INVIRPKEYW DYESLTVQWG EQDDYEVVRK VGRGKYSEVF EGVHCTDNEK CIIKILKPVK KKKIKREIKI LQNLCGGPNI VKLLDIVRDQ QSKTPSLIFE
201: YVNNTDFKVL YPTLSDYDIR YYIYELLKAL DYCHSQGIMH RDVKPHNVMI DHEQRKLRLI DWGLAEFYHP GKEYNVRVAS RYFKGPELLV DLQDYDYSLD
301: LWSLGCMFAG MIFRKEPFFY GHDNYDQLVK IAKVLGTDEL NAYLNKYRLE LDPHLAALVG RHSRKPWTKF VNADNQHLAV PESIDFLDKL LRYDHQERPT
401: AKEAMAHPYF YPIRNAESSR SRAS

Best Arabidopsis Sequence Match ( AT2G23070.1 )
(BLAST)

001: MALRPCTGFT ISSLRNASAA NNNLFSLLSF SSSSPAKRNL LLSSLQDNLR RFASSASLYR QHLRNQQQQH QQQQQSRVKE KSETLAQKIG KSIRRAGAPS
101: KARVYADVNV VRPKDYWDYE SLAVQWGVQD DYEVVRKVGR GKYSEVFEGI HATDNEKCVI KILKPVKKKK IKREIKILQN LCGGPNIVKL LDIVRDQQSK
201: TPSLIFEHVN NKDFKVLYPT LSDYDVRYYI FELLKALDFC HSRGIMHRDV KPHNVMIDHE QRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ
301: DYDYSLDLWS LGCMFAGMIF RKEPFFYGHD NYDQLVKIAK VLGTDELNAY LNKYRIELDP NLTSLVGRHS RKPWTKFINS ENQHLAVPEA VDFVDKLLRY
401: DHQERPTAKE AMAHPYFYPI RNAESSRTPR SQ

Arabidopsis Description

CKA4Casein kinase II subunit alpha-4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64816]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.