CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12241
EES13412
KXG30464
KXG37075
KXG37490
OQU86087

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23070.1	EES13412	AT1G64860.1	22111690
AT2G23070.1	KXG37490	AT2G23070.1	22111690
AT2G23070.1	KXG37075	AT2G36990.1	22111690
AT2G23070.1	EES12241	AT3G14180.1	21798944
AT2G23070.1	KXG30464	AT3G14180.1	21798944
AT2G23070.1	OQU86087	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034137_P001	Maize	plastid	91.0	95.41
Os03t0763000-01	Rice	plastid	85.64	86.27
TraesCS5A01G400900.1	Wheat	mitochondrion, plastid	82.0	81.8
TraesCS5D01G411100.1	Wheat	mitochondrion	81.75	81.36
TraesCS5B01G405700.1	Wheat	mitochondrion, plastid	81.75	81.36
KRH04448	Soybean	nucleus	66.18	78.39
HORVU4Hr1G030100.1	Barley	cytosol	17.52	78.26
EER97857	Sorghum	cytosol	62.77	77.71
HORVU5Hr1G097400.2	Barley	cytosol, mitochondrion, nucleus, plastid	80.05	76.87
CDX76880	Canola	cytosol, mitochondrion	64.48	76.37
EER90840	Sorghum	plastid	65.21	69.61
GSMUA_Achr6P34710_001	Banana	golgi, plasma membrane, vacuole	66.67	67.99
KRH58076	Soybean	endoplasmic reticulum	64.23	67.35
Bra032182.1-P	Field mustard	plastid	65.45	67.08
CDY38928	Canola	plastid	65.45	67.08
Zm00001d032025_P001	Maize	mitochondrion	32.12	66.67
VIT_07s0129g00270.t01	Wine grape	mitochondrion	68.37	66.27
Bra039942.1-P	Field mustard	plastid	66.91	65.48
CDY49445	Canola	plastid	66.91	65.32
CDX89544	Canola	plastid	66.18	65.23
Solyc02g064700.2.1	Tomato	plastid	67.4	64.87
AT2G23070.1	Thale cress	plastid	67.88	64.58
KRH58078	Soybean	cytosol	2.92	63.16
GSMUA_Achr9P09590_001	Banana	mitochondrion, plastid	63.99	60.18
EES00498	Sorghum	cytosol	26.28	26.47
EES00093	Sorghum	cytosol	25.79	26.24
EES06566	Sorghum	cytosol	26.03	25.66
KXG32345	Sorghum	cytosol	24.57	24.94
EES18967	Sorghum	plastid	24.57	24.51
EER90544	Sorghum	cytosol	24.82	23.94
EER92044	Sorghum	cytosol, mitochondrion	25.55	22.34
EER89533	Sorghum	mitochondrion	1.46	5.04

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.3.9.1	Gene3D:3.30.200.20	UniProt:A0A1B6QHX1	GO:GO:0000003	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464
GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0010019
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0040007	GO:GO:0040008	GO:GO:2000028
InterPro:IPR000719	EnsemblPlants:KXG37490	ProteinID:KXG37490	ProteinID:KXG37490.1	ProteinID:KXG37491.2	InterPro:Kinase-like_dom_sf
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24054	PANTHER:PTHR24054:SF33
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	EnsemblPlantsGene:SORBI_3001G079700	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI00081ACED1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:6137917..6144220

Molecular Weight (calculated)

47318.8 Da

IEP (calculated)

9.456

GRAVY (calculated)

-0.456

Length

411 amino acids

Sequence
(BLAST)

001: MAWCALRSRV LPLPASAATA APHGLLLRFF LSTAAPRHAH HHRRRRLAPT AYAAAAAAAA EAPLPMTPRF GRATRHPGAV ASVARVYADA NAQRPKEYWD
101: YESLDIQWGE QDGYEVLRKV GKGKYSEVFE GYRAGSDERC VIKILKPVKK KKIKREIKIL QNLYGGPNIV KLLDVVRDDE SKTPSLIFEH VNNTDFKVLY
201: PVLSDYDIRY YIFELLKALD YCHSRGIMHR DVKPHNVMID HEKRQLRLID WGLAEFYHPK MEYNARVASR CYKGPELLVD LLDYDYSLDL WSLGCMFAAM
301: IFRVDPFFSG QDNYDQLVKI AEVLGTGDLY NYLEKYGLQL DPQLERLVGR HNRKPWPKFV NARNRHLATP EAIDLVDKLL RYDHQERPTA KETMAHPYFN
401: PVRSSESKTN S

Best Arabidopsis Sequence Match ( AT2G23070.1 )
(BLAST)

001: MALRPCTGFT ISSLRNASAA NNNLFSLLSF SSSSPAKRNL LLSSLQDNLR RFASSASLYR QHLRNQQQQH QQQQQSRVKE KSETLAQKIG KSIRRAGAPS
101: KARVYADVNV VRPKDYWDYE SLAVQWGVQD DYEVVRKVGR GKYSEVFEGI HATDNEKCVI KILKPVKKKK IKREIKILQN LCGGPNIVKL LDIVRDQQSK
201: TPSLIFEHVN NKDFKVLYPT LSDYDVRYYI FELLKALDFC HSRGIMHRDV KPHNVMIDHE QRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ
301: DYDYSLDLWS LGCMFAGMIF RKEPFFYGHD NYDQLVKIAK VLGTDELNAY LNKYRIELDP NLTSLVGRHS RKPWTKFINS ENQHLAVPEA VDFVDKLLRY
401: DHQERPTAKE AMAHPYFYPI RNAESSRTPR SQ

Arabidopsis Description

CKA4Casein kinase II subunit alpha-4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64816]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.