Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 3
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
mitochondrion: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28388 | Soybean | cytosol | 80.29 | 99.1 |
| KRH77093 | Soybean | nucleus | 80.05 | 98.8 |
| GSMUA_Achr6P16850_001 | Banana | cytosol | 78.35 | 96.7 |
| KRH04471 | Soybean | nucleus | 93.43 | 96.48 |
| Solyc03g044140.2.1 | Tomato | cytosol, nucleus | 77.62 | 95.8 |
| GSMUA_Achr10P... | Banana | cytosol | 77.62 | 95.8 |
| PGSC0003DMT400064191 | Potato | cytosol | 77.62 | 95.8 |
| Os07t0114400-01 | Rice | plasma membrane | 77.37 | 95.5 |
| Solyc02g092640.2.1 | Tomato | cytosol, nucleus | 77.37 | 95.5 |
| GSMUA_Achr5P01690_001 | Banana | cytosol | 77.37 | 95.5 |
| EER97857 | Sorghum | cytosol | 77.13 | 95.48 |
| CDY30613 | Canola | cytosol | 76.64 | 94.59 |
| CDY57359 | Canola | cytosol | 76.4 | 94.58 |
| HORVU2Hr1G063420.1 | Barley | cytosol | 76.4 | 94.29 |
| TraesCS2D01G260500.1 | Wheat | cytosol | 76.4 | 94.29 |
| CDX83104 | Canola | cytosol | 75.43 | 94.22 |
| Bra029986.1-P | Field mustard | cytosol | 75.43 | 94.22 |
| CDY57680 | Canola | cytosol | 76.16 | 93.99 |
| Zm00001d007951_P001 | Maize | cytosol, nucleus | 75.67 | 93.67 |
| CDY70654 | Canola | cytosol | 38.93 | 93.02 |
| TraesCS2A01G263400.1 | Wheat | cytosol, nucleus | 77.37 | 92.98 |
| AT2G23080.1 | Thale cress | cytosol | 74.45 | 91.89 |
| Os03t0207300-01 | Rice | cytosol | 72.02 | 89.16 |
| TraesCS4A01G049900.1 | Wheat | cytosol | 70.56 | 87.35 |
| TraesCS4D01G254600.1 | Wheat | cytosol | 70.56 | 87.35 |
| TraesCS4B01G254800.1 | Wheat | cytosol | 69.83 | 87.23 |
| HORVU4Hr1G069390.1 | Barley | cytosol | 70.32 | 87.05 |
| VIT_07s0129g00410.t01 | Wine grape | golgi, plasma membrane | 85.16 | 86.42 |
| EER90840 | Sorghum | plastid | 79.08 | 84.42 |
| Bra036044.1-P | Field mustard | plasma membrane | 79.32 | 83.8 |
| TraesCS5A01G400100.1 | Wheat | cytosol, mitochondrion | 76.89 | 82.94 |
| TraesCS5D01G410000.1 | Wheat | plastid | 76.89 | 82.94 |
| Zm00001d034125_P002 | Maize | mitochondrion, plastid | 77.62 | 82.86 |
| Zm00001d013217_P001 | Maize | cytosol | 77.13 | 82.77 |
| HORVU5Hr1G097230.1 | Barley | cytosol, plastid | 76.89 | 82.72 |
| TraesCS5B01G404900.1 | Wheat | cytosol, mitochondrion | 76.64 | 82.68 |
| KRH04448 | Soybean | nucleus | 69.59 | 82.42 |
| AT3G50000.1 | Thale cress | golgi, plasma membrane, vacuole | 80.78 | 82.38 |
| AT5G67380.1 | Thale cress | golgi, plasma membrane | 81.27 | 81.66 |
| Bra036806.1-P | Field mustard | cytosol | 65.69 | 80.12 |
| Zm00001d018669_P004 | Maize | cytosol | 72.99 | 79.79 |
| CDX98044 | Canola | cytosol | 30.9 | 79.38 |
| TraesCS2B01G278700.2 | Wheat | cytosol | 72.02 | 78.31 |
| Bra031829.1-P | Field mustard | cytosol | 49.39 | 74.09 |
| KRH58076 | Soybean | endoplasmic reticulum | 68.13 | 71.43 |
| KRH58078 | Soybean | cytosol | 3.16 | 68.42 |
| CDY67469 | Canola | vacuole | 47.93 | 67.24 |
| CDY71648 | Canola | plastid | 25.79 | 65.84 |
| CDY15289 | Canola | vacuole | 43.8 | 65.22 |
| CDY29766 | Canola | golgi, plasma membrane | 54.74 | 63.56 |
| Os03t0762000-01 | Rice | plastid | 22.38 | 63.45 |
| CDY25489 | Canola | golgi, plasma membrane | 48.42 | 40.95 |
| KRH62838 | Soybean | cytosol, mitochondrion | 7.06 | 35.37 |
| KRH31752 | Soybean | cytosol | 26.28 | 26.41 |
| KRG96686 | Soybean | cytosol | 25.79 | 26.11 |
| KRH33767 | Soybean | cytosol | 26.03 | 26.1 |
| KRH11042 | Soybean | cytosol | 24.09 | 26.05 |
| KRH21245 | Soybean | cytosol | 23.6 | 25.94 |
| KRH27067 | Soybean | cytosol | 25.79 | 25.92 |
| KRH22265 | Soybean | cytosol | 26.28 | 25.9 |
| KRH68409 | Soybean | cytosol | 25.55 | 25.86 |
| KRH61707 | Soybean | cytosol | 23.84 | 25.79 |
| KRH52380 | Soybean | cytosol | 23.84 | 25.79 |
| KRG90477 | Soybean | cytosol | 26.28 | 25.35 |
| KRH25797 | Soybean | cytosol | 25.79 | 25.24 |
| KRH55721 | Soybean | cytosol | 25.3 | 24.82 |
| KRH06055 | Soybean | cytosol | 25.06 | 24.52 |
| KRH26299 | Soybean | cytosol | 25.06 | 24.52 |
| KRH69166 | Soybean | cytosol | 26.52 | 24.17 |
| KRH58985 | Soybean | cytosol | 22.38 | 24.02 |
| KRH42881 | Soybean | cytosol | 22.38 | 24.02 |
| KRH48234 | Soybean | cytosol, mitochondrion | 26.76 | 23.4 |
| KRH65140 | Soybean | mitochondrion | 26.28 | 22.98 |
| KRH40543 | Soybean | mitochondrion | 24.57 | 21.96 |
| KRH00638 | Soybean | mitochondrion | 24.57 | 21.63 |
| KRH75231 | Soybean | cytosol | 5.11 | 21.0 |
| KRH21176 | Soybean | cytosol | 12.9 | 20.38 |
| KRH12527 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 9.49 | 17.18 |
| KRH70115 | Soybean | cytosol | 13.87 | 16.43 |
| KRH32741 | Soybean | mitochondrion | 7.3 | 13.22 |
Protein Annotations
| Gene3D:1.10.510.10 | EntrezGene:100819679 | MapMan:18.4.3.9.1 | Gene3D:3.30.200.20 | EMBL:ACUP02003196 | EnsemblPlantsGene:GLYMA_05G104200 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004672 | GO:GO:0004674 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0006464 | GO:GO:0006468 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016301 | GO:GO:0016740 | GO:GO:0019538 | UniProt:I1K2C5 | InterPro:IPR000719 | EnsemblPlants:KRH58068 |
| ProteinID:KRH58068 | ProteinID:KRH58068.1 | InterPro:Kinase-like_dom_sf | PFAM:PF00069 | ScanProsite:PS00107 | ScanProsite:PS00108 |
| PFscan:PS50011 | PANTHER:PTHR24054 | PANTHER:PTHR24054:SF33 | InterPro:Prot_kinase_dom | InterPro:Protein_kinase_ATP_BS | SMART:SM00220 |
| SUPFAM:SSF56112 | InterPro:Ser/Thr_kinase_AS | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000233A3ED | SEG:seg |
Description
hypothetical protein
Coordinates
chr5:+:27714263..27723257
Molecular Weight (calculated)
48204.3 Da
IEP (calculated)
9.269
GRAVY (calculated)
-0.437
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MCKCKYYRYT RIKYAQEAPP ALLLRFLLVC TLVALRAPVA QPPIVRIPPN HLTETTNTVI TIVHQRHRTQ ISGSTRPAMS KARVYTDVNV LRPKEYWDYE
101: SLTVQWGDQD DYEVVRKVGR GKYSEVFEGI NVNSNERCII KILKPVKKKK IKREIKILQN LCGGPNIVKL LDIVRDQHSK TPSLIFEYVN STDFKVLYPT
201: LTDYDIRYYI YELLKAIDYC HSQGIMHRDV KPHNVMIDHE LRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ DYDYSLDMWS LGCMFAGMIF
301: RKEPFFYGHD NHDQLVKIAK VLGTDELNAY LNKYHLELDP QLDALVGRHS RKPWSKFINA DNQHLVSPEA IDFLDKLLRY DHQDRLTARE AMAHPYFSQV
401: RAAESSRMRT Q
101: SLTVQWGDQD DYEVVRKVGR GKYSEVFEGI NVNSNERCII KILKPVKKKK IKREIKILQN LCGGPNIVKL LDIVRDQHSK TPSLIFEYVN STDFKVLYPT
201: LTDYDIRYYI YELLKAIDYC HSQGIMHRDV KPHNVMIDHE LRKLRLIDWG LAEFYHPGKE YNVRVASRYF KGPELLVDLQ DYDYSLDMWS LGCMFAGMIF
301: RKEPFFYGHD NHDQLVKIAK VLGTDELNAY LNKYHLELDP QLDALVGRHS RKPWSKFINA DNQHLVSPEA IDFLDKLLRY DHQDRLTARE AMAHPYFSQV
401: RAAESSRMRT Q
001: MIDTLFFLFF LFFDSPLRRL LLLCAVLALR APTAHSPILR SSIVTPTARA VSEVSGCTTI DPDFLVEISD SNQTRAMSKA RVYTEVNVIR PKDYWDYESL
101: IVQWGEQDDY EVVRKVGRGK YSEVFEGINV NSKEKCIIKI LKPVKKKKIR REIKILQNLC GGPNIVKLLD VVRDQHSKTP SLIFEYVNST DFKVLYPTLT
201: DYDIRYYIYE LLKALDFCHS QGIMHRDVKP HNVMIDHELR KLRLIDWGLA EFYHPGKEYN VRVASRYFKG PELLVDLQDY DYSLDMWSLG CMFAGMIFRK
301: EPFFYGHDNQ DQLVKIAKVL GTDELNAYLN KYQLELDPQL EALVGRHSRK PWSKFINADN QHLVSPEAID FLDKLLRYDH QDRLTAKEAM AHAYFAQVRA
401: AETSRMRSQ
101: IVQWGEQDDY EVVRKVGRGK YSEVFEGINV NSKEKCIIKI LKPVKKKKIR REIKILQNLC GGPNIVKLLD VVRDQHSKTP SLIFEYVNST DFKVLYPTLT
201: DYDIRYYIYE LLKALDFCHS QGIMHRDVKP HNVMIDHELR KLRLIDWGLA EFYHPGKEYN VRVASRYFKG PELLVDLQDY DYSLDMWSLG CMFAGMIFRK
301: EPFFYGHDNQ DQLVKIAKVL GTDELNAYLN KYQLELDPQL EALVGRHSRK PWSKFINADN QHLVSPEAID FLDKLLRYDH QDRLTAKEAM AHAYFAQVRA
401: AETSRMRSQ
Arabidopsis Description
CKA1Casein kinase II subunit alpha-1 [Source:UniProtKB/Swiss-Prot;Acc:Q08467]
SUBAcon: [plasma membrane,golgi]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.