Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G260500.1 | Wheat | cytosol | 97.37 | 100.0 |
| HORVU2Hr1G063420.1 | Barley | cytosol | 97.37 | 100.0 |
| EER97857 | Sorghum | cytosol | 95.61 | 98.49 |
| Os07t0114400-01 | Rice | plasma membrane | 95.03 | 97.6 |
| Zm00001d007951_P001 | Maize | cytosol, nucleus | 93.86 | 96.69 |
| GSMUA_Achr5P01690_001 | Banana | cytosol | 93.27 | 95.8 |
| Solyc03g044140.2.1 | Tomato | cytosol, nucleus | 91.52 | 93.99 |
| KRH28388 | Soybean | cytosol | 91.52 | 93.99 |
| KRH77093 | Soybean | nucleus | 91.23 | 93.69 |
| Bra029986.1-P | Field mustard | cytosol | 89.77 | 93.31 |
| CDX83104 | Canola | cytosol | 89.77 | 93.31 |
| CDY30613 | Canola | cytosol | 90.64 | 93.09 |
| CDY57680 | Canola | cytosol | 90.64 | 93.09 |
| CDY57359 | Canola | cytosol | 90.35 | 93.07 |
| VIT_18s0001g09320.t01 | Wine grape | cytosol | 90.35 | 92.79 |
| PGSC0003DMT400064191 | Potato | cytosol | 90.35 | 92.79 |
| Solyc02g092640.2.1 | Tomato | cytosol, nucleus | 90.06 | 92.49 |
| CDY70654 | Canola | cytosol | 46.2 | 91.86 |
| AT2G23080.1 | Thale cress | cytosol | 88.01 | 90.39 |
| TraesCS4A01G049900.1 | Wheat | cytosol | 85.67 | 88.25 |
| TraesCS5A01G400100.1 | Wheat | cytosol, mitochondrion | 93.57 | 83.99 |
| TraesCS2B01G278700.2 | Wheat | cytosol | 90.64 | 82.01 |
| Zm00001d018669_P004 | Maize | cytosol | 89.18 | 81.12 |
| KRH04471 | Soybean | nucleus | 93.57 | 80.4 |
| CDX98044 | Canola | cytosol | 37.43 | 80.0 |
| Bra036044.1-P | Field mustard | plasma membrane | 90.94 | 79.95 |
| Bra036806.1-P | Field mustard | cytosol | 78.07 | 79.23 |
| VIT_07s0129g00410.t01 | Wine grape | golgi, plasma membrane | 92.11 | 77.78 |
| KRH58068 | Soybean | mitochondrion | 92.98 | 77.37 |
| AT3G50000.1 | Thale cress | golgi, plasma membrane, vacuole | 90.94 | 77.17 |
| AT5G67380.1 | Thale cress | golgi, plasma membrane | 90.94 | 76.04 |
| Bra031829.1-P | Field mustard | cytosol | 58.77 | 73.36 |
| CDY71648 | Canola | plastid | 31.29 | 66.46 |
| CDY67469 | Canola | vacuole | 54.97 | 64.16 |
| CDY15289 | Canola | vacuole | 50.29 | 62.32 |
| TraesCS5A01G400900.1 | Wheat | mitochondrion, plastid | 74.56 | 61.89 |
| CDY29766 | Canola | golgi, plasma membrane | 63.74 | 61.58 |
| CDY25489 | Canola | golgi, plasma membrane | 56.73 | 39.92 |
| TraesCS3A01G136500.1 | Wheat | cytosol | 30.12 | 27.25 |
| TraesCS3A01G164200.1 | Wheat | cytosol | 31.29 | 26.35 |
| TraesCS1A01G125000.1 | Wheat | cytosol | 30.41 | 25.87 |
| TraesCS4A01G361100.1 | Wheat | cytosol | 29.24 | 24.51 |
| TraesCS4A01G345500.1 | Wheat | cytosol | 30.41 | 24.3 |
| TraesCS1A01G407700.5 | Wheat | cytosol | 30.41 | 24.3 |
| TraesCS1A01G077200.1 | Wheat | cytosol | 28.95 | 24.15 |
| TraesCS1A01G189000.1 | Wheat | cytosol, mitochondrion | 30.7 | 22.39 |
| TraesCS4A01G365100.1 | Wheat | endoplasmic reticulum, extracellular, plastid | 4.68 | 13.68 |
| TraesCS5A01G259000.1 | Wheat | endoplasmic reticulum, extracellular, plastid | 4.39 | 13.04 |
Protein Annotations
| Gene3D:1.10.510.10 | MapMan:18.4.3.9.1 | Gene3D:3.30.200.20 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004672 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006464 | GO:GO:0006468 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR000719 |
| InterPro:Kinase-like_dom_sf | PFAM:PF00069 | ScanProsite:PS00107 | ScanProsite:PS00108 | PFscan:PS50011 | PANTHER:PTHR24054 |
| PANTHER:PTHR24054:SF33 | InterPro:Prot_kinase_dom | InterPro:Protein_kinase_ATP_BS | SMART:SM00220 | SUPFAM:SSF56112 | InterPro:Ser/Thr_kinase_AS |
| EnsemblPlantsGene:TraesCS2A01G263400 | EnsemblPlants:TraesCS2A01G263400.1 | TIGR:cd14132 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2A:-:418396384..418400504
Molecular Weight (calculated)
39929.9 Da
IEP (calculated)
8.700
GRAVY (calculated)
-0.499
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: PAGSGSSSAM SKARVYADVN VVRPKEYWDY EALAVQWGEQ DDYEVVRKVG RGKYSEVFEG INVNNNEKCV IKILKPVKKK KIKREIKILQ NLCGGPNIVK
101: LLDIVRDQHS KTPSLIFEYI NNTDFKVLYP TLTDYDIRYY IYELLKALDY CHSQGIMHRD VKPHNVMIDH ELRKLRLIDW GLAEFYHPGK EYNVRVASRY
201: FKGPELLVDL QDYDYSLDMW SLGCMFAGMI FRKEPFFYGH DNHDQLVKIA KVLGTDGLNA YLNKYRIELD PQLEALVGRH SRKPWSKFIN ADNQHLVSPE
301: AIDFLDKLLR YDHQDRLTAR EAMAHPYFLQ VRAAENSRTR AQ
101: LLDIVRDQHS KTPSLIFEYI NNTDFKVLYP TLTDYDIRYY IYELLKALDY CHSQGIMHRD VKPHNVMIDH ELRKLRLIDW GLAEFYHPGK EYNVRVASRY
201: FKGPELLVDL QDYDYSLDMW SLGCMFAGMI FRKEPFFYGH DNHDQLVKIA KVLGTDGLNA YLNKYRIELD PQLEALVGRH SRKPWSKFIN ADNQHLVSPE
301: AIDFLDKLLR YDHQDRLTAR EAMAHPYFLQ VRAAENSRTR AQ
001: MIDTLFFLFF LFFDSPLRRL LLLCAVLALR APTAHSPILR SSIVTPTARA VSEVSGCTTI DPDFLVEISD SNQTRAMSKA RVYTEVNVIR PKDYWDYESL
101: IVQWGEQDDY EVVRKVGRGK YSEVFEGINV NSKEKCIIKI LKPVKKKKIR REIKILQNLC GGPNIVKLLD VVRDQHSKTP SLIFEYVNST DFKVLYPTLT
201: DYDIRYYIYE LLKALDFCHS QGIMHRDVKP HNVMIDHELR KLRLIDWGLA EFYHPGKEYN VRVASRYFKG PELLVDLQDY DYSLDMWSLG CMFAGMIFRK
301: EPFFYGHDNQ DQLVKIAKVL GTDELNAYLN KYQLELDPQL EALVGRHSRK PWSKFINADN QHLVSPEAID FLDKLLRYDH QDRLTAKEAM AHAYFAQVRA
401: AETSRMRSQ
101: IVQWGEQDDY EVVRKVGRGK YSEVFEGINV NSKEKCIIKI LKPVKKKKIR REIKILQNLC GGPNIVKLLD VVRDQHSKTP SLIFEYVNST DFKVLYPTLT
201: DYDIRYYIYE LLKALDFCHS QGIMHRDVKP HNVMIDHELR KLRLIDWGLA EFYHPGKEYN VRVASRYFKG PELLVDLQDY DYSLDMWSLG CMFAGMIFRK
301: EPFFYGHDNQ DQLVKIAKVL GTDELNAYLN KYQLELDPQL EALVGRHSRK PWSKFINADN QHLVSPEAID FLDKLLRYDH QDRLTAKEAM AHAYFAQVRA
401: AETSRMRSQ
Arabidopsis Description
CKA1Casein kinase II subunit alpha-1 [Source:UniProtKB/Swiss-Prot;Acc:Q08467]
SUBAcon: [plasma membrane,golgi]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.