Factsheet for TraesCS2A01G390500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G299400.3
TraesCS7B01G188000.1
TraesCS7D01G295400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60250.1	TraesCS7A01G299400.3	AT2G46830.1	10535927
AT3G60250.1	TraesCS7B01G188000.1	AT2G46830.1	10535927
AT3G60250.1	TraesCS7D01G295400.1	AT2G46830.1	10535927
AT3G60250.1	TraesCS7A01G299400.3	AT2G46830.1	14978263
AT3G60250.1	TraesCS7B01G188000.1	AT2G46830.1	14978263
AT3G60250.1	TraesCS7D01G295400.1	AT2G46830.1	14978263
AT3G60250.1	TraesCS7A01G299400.3	AT2G46830.1	9724822
AT3G60250.1	TraesCS7B01G188000.1	AT2G46830.1	9724822
AT3G60250.1	TraesCS7D01G295400.1	AT2G46830.1	9724822
AT4G17640.1	TraesCS7A01G299400.3	AT2G46830.1	9724822
AT4G17640.1	TraesCS7B01G188000.1	AT2G46830.1	9724822
AT4G17640.1	TraesCS7D01G295400.1	AT2G46830.1	9724822
AT5G47080.1	TraesCS7A01G299400.3	AT2G46830.1	9724822
AT5G47080.1	TraesCS7B01G188000.1	AT2G46830.1	9724822
AT5G47080.1	TraesCS7D01G295400.1	AT2G46830.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G092930.1	Barley	cytosol	100.0	100.0
TraesCS2D01G388200.1	Wheat	cytosol	100.0	100.0
TraesCS2B01G408900.1	Wheat	cytosol	100.0	100.0
OQU82060	Sorghum	cytosol	86.28	85.97
Zm00001d002778_P001	Maize	nucleus	74.37	85.83
Solyc10g061940.1.1	Tomato	mitochondrion	36.1	85.47
KRH57540	Soybean	nucleus	71.12	75.48
GSMUA_AchrUn_...	Banana	cytosol	73.65	72.86
GSMUA_Achr4P26360_001	Banana	cytosol	73.65	72.86
TraesCS1A01G215700.1	Wheat	cytosol	71.84	72.36
TraesCS2A01G245100.1	Wheat	cytosol	70.4	71.96
Bra022101.1-P	Field mustard	cytosol	71.84	71.84
GSMUA_Achr4P30080_001	Banana	cytosol	72.56	71.79
KRH04253	Soybean	nucleus	68.23	71.59
CDY28980	Canola	cytosol	71.48	71.48
VIT_02s0012g00080.t01	Wine grape	cytosol	68.59	71.43
KRH77278	Soybean	nucleus	73.29	71.23
AT5G47080.1	Thale cress	cytosol	73.65	71.08
CDY40582	Canola	cytosol	70.76	71.01
KRH28210	Soybean	nucleus	73.29	70.98
Bra003407.1-P	Field mustard	cytosol	66.79	69.29
CDY64765	Canola	cytosol	66.79	69.29
Bra007520.1-P	Field mustard	cytosol	65.7	69.2
CDY41181	Canola	cytosol	65.7	69.2
AT4G17640.1	Thale cress	cytosol	70.4	69.15
Solyc05g050680.2.1	Tomato	nucleus	71.12	69.12
Bra000359.1-P	Field mustard	cytosol	68.59	69.09
PGSC0003DMT400004353	Potato	cytosol	72.56	69.07
CDX83421	Canola	cytosol	68.23	68.73
CDX71824	Canola	cytosol	64.98	68.44
Solyc01g088740.2.1	Tomato	cytosol	70.4	68.18
KRH57536	Soybean	cytosol	63.18	68.09
CDY09612	Canola	cytosol	70.04	68.07
CDX90462	Canola	cytosol	70.04	68.07
CDX95610	Canola	cytosol	67.51	68.0
Bra004856.1-P	Field mustard	cytosol	64.26	67.94
KRH04249	Soybean	nucleus	63.9	67.56
AT2G44680.1	Thale cress	cytosol	68.95	67.49
CDX77739	Canola	cytosol	60.65	67.47
CDX74677	Canola	cytosol	64.98	67.42
PGSC0003DMT400068359	Potato	cytosol	68.95	67.02
CDY48249	Canola	cytosol	64.62	66.79
Solyc06g061000.2.1	Tomato	cytosol	68.95	66.78
GSMUA_Achr8P14950_001	Banana	cytosol	67.87	66.2
CDX78786	Canola	cytosol	66.06	65.36
AT3G60250.1	Thale cress	cytosol	64.62	64.86
Bra040171.1-P	Field mustard	cytosol	65.7	64.77
CDY38414	Canola	cytosol	65.34	63.73
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	58.12	63.39
GSMUA_Achr2P10400_001	Banana	cytosol	73.29	62.46
VIT_15s0021g01020.t01	Wine grape	cytosol	62.82	56.86
PGSC0003DMT400018024	Potato	mitochondrion	62.82	56.31
CDY64781	Canola	cytosol	52.71	54.89
Bra025463.1-P	Field mustard	cytosol	55.23	54.64
Bra025515.1-P	Field mustard	cytosol	52.71	54.28
CDY48948	Canola	cytosol	53.07	54.24
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	44.4	52.56
Solyc10g061930.1.1	Tomato	nucleus	30.32	50.6
GSMUA_Achr4P17860_001	Banana	cytosol	30.69	48.3
Bra012652.1-P	Field mustard	cytosol	53.79	45.71

Protein Annotations

Gene3D:1.10.1820.10	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005956	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234
InterPro:IPR016149	PFAM:PF01214	PRINTS:PR00472	ScanProsite:PS01101	PANTHER:PTHR11740	PANTHER:PTHR11740:SF15
SMART:SM01085	SUPFAM:SSF57798	EnsemblPlantsGene:TraesCS2A01G390500	EnsemblPlants:TraesCS2A01G390500.1	SEG:seg	:

Description

No Description!

Coordinates

chr2A:+:640081683..640086133

Molecular Weight (calculated)

30841.0 Da

IEP (calculated)

4.939

GRAVY (calculated)

-0.614

Length

277 amino acids

Sequence
(BLAST)

001: MQRDRGVSAA AGGAGERKRI GEAMDRSSPS TSWGFSGGRE RDRIAAGKQP EVPRSGGGST AMSKGKLSDG ESDTDSEESD LSGSDGEDTS WISWFCSLRG
101: NEFFCEVDDD YIQDDFNLCG LSGQVPYYEY ALDLILDVES SHGDMFTEEQ NELIESAAEM LYGLIHVRYI LTSKGLAAML DKYKNYDFGR CPRVHCSGQP
201: CLPVGQSDIP RSSNVKIYCP KCEDLYYPRS KYQSNIDGAY FGTTFPHLFL MTYPHLKPQK PSQQYVPKVF GFKLHKP

Best Arabidopsis Sequence Match ( AT5G47080.1 )
(BLAST)

001: MYRDRGTVNS RPEVVDRKRI NDALERPSPS TSRQVNGKGK GTVTAATTTA NLIGKQQSNN INHRDSRSAS LSKNNTVSDD ESDTDSEESD VSGSDGEDTS
101: WISWFCNLRG NEFFCEVDDD YIQDDFNLCG LSSLVPYYEY ALDLILDVES SQGEMFTEEQ NELIESAAEM LYGLIHARYI LTSKGLAAML DKYKNYDFGR
201: CPRVYCCGQP CLPVGQSDLP RSSTVKIYCP KCEDIYYPRS KYQGNIDGAY FGTTFPHLFL MTYGHLKPAK ATQNYVQRVF GFKLHKP

Arabidopsis Description

CKB1Casein kinase II subunit beta-1 [Source:UniProtKB/Swiss-Prot;Acc:P40228]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.