Factsheet for PGSC0003DMT400068359

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g061000.2.1	Tomato	cytosol	97.89	97.55
VIT_02s0012g00080.t01	Wine grape	cytosol	72.63	77.82
TraesCS2D01G242000.2	Wheat	cytosol	72.98	77.32
Zm00001d021557_P001	Maize	cytosol	73.68	76.92
TraesCS2A01G245100.1	Wheat	cytosol	72.98	76.75
KXG36270	Sorghum	cytosol	72.98	75.64
Os07t0495100-01	Rice	cytosol	74.74	73.96
PGSC0003DMT400004353	Potato	cytosol	75.09	73.54
EER91910	Sorghum	cytosol	66.32	72.14
TraesCSU01G007300.1	Wheat	cytosol	68.07	70.55
TraesCS1A01G215700.1	Wheat	cytosol	68.07	70.55
TraesCS1B01G229200.1	Wheat	cytosol	68.07	70.55
HORVU1Hr1G055250.1	Barley	cytosol	67.72	70.18
Os10t0564900-01	Rice	cytosol	68.07	69.53
Zm00001d029978_P001	Maize	cytosol	53.33	69.09
TraesCS2A01G390500.1	Wheat	cytosol	67.02	68.95
TraesCS2B01G408900.1	Wheat	cytosol	67.02	68.95
TraesCS2D01G388200.1	Wheat	cytosol	67.02	68.95
HORVU2Hr1G092930.1	Barley	cytosol	67.02	68.95
Zm00001d006440_P003	Maize	cytosol	71.93	67.88
OQU82060	Sorghum	cytosol	65.61	67.27
Zm00001d002778_P001	Maize	nucleus	55.79	66.25
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	56.84	64.03
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	56.49	63.39
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	47.02	61.47
HORVU4Hr1G090280.3	Barley	cytosol	56.14	59.04
PGSC0003DMT400018024	Potato	mitochondrion	63.51	58.58
Zm00001d000052_P004	Maize	cytosol	52.98	52.25
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	42.81	52.14

Protein Annotations

Gene3D:1.10.1820.10	EntrezGene:102600211	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like
InterPro:Casein_kinase_II_reg-sub	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005956
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019887
GO:GO:0030234	GO:GO:0045859	InterPro:IPR016149	UniProt:M1CIX9	PFAM:PF01214	EnsemblPlantsGene:PGSC0003DMG400026584
PGSC:PGSC0003DMG400026584	EnsemblPlants:PGSC0003DMT400068359	PRINTS:PR00472	PANTHER:PTHR11740	PANTHER:PTHR11740:SF15	SMART:SM01085
SUPFAM:SSF57798	UniParc:UPI0002949A64	RefSeq:XP_006361162.1	SEG:seg	:	:

Description

Protein kinase Ck2 regulatory subunit 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400026584]

Coordinates

chr6:+:44305680..44313590

Molecular Weight (calculated)

32210.7 Da

IEP (calculated)

5.634

GRAVY (calculated)

-0.660

Length

285 amino acids

Sequence
(BLAST)

001: MYKERRVGGG SKPEMGRVGD RKRLNEALDK HLERSSPSTS TTTVRGTNGK DHRFALSKSK DQLRNAAPPP PDNKCSDAES ETDSEASDIS GSDGEDTSWI
101: SWYCGLRGNE FFCEVDDDYI QDDFNLCGLS SLVPYYDYAL DLILDVESSH GDMFTEEQNE LVESAAEMLY GLIHARYILT TKGLAAMLEK YKNAEFGRCP
201: RVYCCGQPCL PVGQSDIPRQ SRVNIYCPRC EDVYTPRSRY HENIDGAYFG TTFPHLFLMT YGHLKPQKIS QSYVPRVFGF KVHKP

Best Arabidopsis Sequence Match ( AT5G47080.1 )
(BLAST)

001: MYRDRGTVNS RPEVVDRKRI NDALERPSPS TSRQVNGKGK GTVTAATTTA NLIGKQQSNN INHRDSRSAS LSKNNTVSDD ESDTDSEESD VSGSDGEDTS
101: WISWFCNLRG NEFFCEVDDD YIQDDFNLCG LSSLVPYYEY ALDLILDVES SQGEMFTEEQ NELIESAAEM LYGLIHARYI LTSKGLAAML DKYKNYDFGR
201: CPRVYCCGQP CLPVGQSDLP RSSTVKIYCP KCEDIYYPRS KYQGNIDGAY FGTTFPHLFL MTYGHLKPAK ATQNYVQRVF GFKLHKP

Arabidopsis Description

CKB1Casein kinase II subunit beta-1 [Source:UniProtKB/Swiss-Prot;Acc:P40228]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.