Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400029394 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60250.1 | PGSC0003DMT400029394 | AT2G46830.1 | 10535927 |
| AT3G60250.1 | PGSC0003DMT400029394 | AT2G46830.1 | 14978263 |
| AT3G60250.1 | PGSC0003DMT400029394 | AT2G46830.1 | 9724822 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g088740.2.1 | Tomato | cytosol | 88.66 | 90.21 |
| TraesCS2D01G242000.2 | Wheat | cytosol | 74.91 | 81.04 |
| Bra003407.1-P | Field mustard | cytosol | 74.23 | 80.9 |
| Bra007520.1-P | Field mustard | cytosol | 72.51 | 80.23 |
| CDY41181 | Canola | cytosol | 72.51 | 80.23 |
| CDY64765 | Canola | cytosol | 73.54 | 80.15 |
| TraesCS2A01G245100.1 | Wheat | cytosol | 74.57 | 80.07 |
| Zm00001d021557_P001 | Maize | cytosol | 74.91 | 79.85 |
| KXG36270 | Sorghum | cytosol | 74.91 | 79.27 |
| AT2G44680.1 | Thale cress | cytosol | 76.98 | 79.15 |
| CDX71824 | Canola | cytosol | 71.13 | 78.71 |
| Os07t0495100-01 | Rice | cytosol | 75.94 | 76.74 |
| Bra000359.1-P | Field mustard | cytosol | 72.51 | 76.73 |
| Bra004856.1-P | Field mustard | cytosol | 69.07 | 76.72 |
| CDX83421 | Canola | cytosol | 72.16 | 76.36 |
| AT3G60250.1 | Thale cress | cytosol | 71.82 | 75.72 |
| CDX74677 | Canola | cytosol | 69.42 | 75.66 |
| CDX95610 | Canola | cytosol | 71.48 | 75.64 |
| CDY48249 | Canola | cytosol | 69.42 | 75.37 |
| EER91910 | Sorghum | cytosol | 67.7 | 75.19 |
| PGSC0003DMT400068359 | Potato | cytosol | 73.54 | 75.09 |
| Zm00001d029978_P001 | Maize | cytosol | 55.67 | 73.64 |
| TraesCSU01G007300.1 | Wheat | cytosol | 69.42 | 73.45 |
| TraesCS1A01G215700.1 | Wheat | cytosol | 69.42 | 73.45 |
| TraesCS1B01G229200.1 | Wheat | cytosol | 69.42 | 73.45 |
| HORVU1Hr1G055250.1 | Barley | cytosol | 69.07 | 73.09 |
| Os10t0564900-01 | Rice | cytosol | 69.76 | 72.76 |
| TraesCS2A01G390500.1 | Wheat | cytosol | 69.07 | 72.56 |
| TraesCS2D01G388200.1 | Wheat | cytosol | 69.07 | 72.56 |
| TraesCS2B01G408900.1 | Wheat | cytosol | 69.07 | 72.56 |
| HORVU2Hr1G092930.1 | Barley | cytosol | 69.07 | 72.56 |
| Zm00001d006440_P003 | Maize | cytosol | 73.88 | 71.19 |
| OQU82060 | Sorghum | cytosol | 67.7 | 70.86 |
| Zm00001d002778_P001 | Maize | nucleus | 57.39 | 69.58 |
| TraesCSU01G129600.1 | Wheat | cytosol, mitochondrion | 57.73 | 66.4 |
| PGSC0003DMT400018024 | Potato | mitochondrion | 70.1 | 66.02 |
| TraesCS5A01G545600.3 | Wheat | cytosol, mitochondrion | 57.39 | 65.75 |
| TraesCS4B01G379300.1 | Wheat | cytosol, mitochondrion | 48.8 | 65.14 |
| HORVU4Hr1G090280.3 | Barley | cytosol | 56.7 | 60.89 |
| GSMUA_Achr4P17850_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 47.08 | 58.55 |
| Zm00001d000052_P004 | Maize | cytosol | 54.3 | 54.67 |
Protein Annotations
| Gene3D:1.10.1820.10 | EntrezGene:102591581 | MapMan:18.4.3.9.2 | Gene3D:2.20.25.20 | InterPro:Casein_kin_II_reg-sub_N | InterPro:Casein_kinase_II_beta_like |
| InterPro:Casein_kinase_II_reg-sub | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005956 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019887 |
| GO:GO:0030234 | GO:GO:0045859 | InterPro:IPR016149 | UniProt:M0ZNA5 | PFAM:PF01214 | EnsemblPlantsGene:PGSC0003DMG403001724 |
| PGSC:PGSC0003DMG403001724 | EnsemblPlants:PGSC0003DMT400004353 | PRINTS:PR00472 | ScanProsite:PS01101 | PANTHER:PTHR11740 | PANTHER:PTHR11740:SF15 |
| SMART:SM01085 | SUPFAM:SSF57798 | UniParc:UPI000296B4F3 | RefSeq:XP_006354655.1 | SEG:seg | : |
Description
Protein kinase Ck2 regulatory subunit 2 [Source:PGSC_GENE;Acc:PGSC0003DMG403001724]
Coordinates
chr1:-:68641011..68645559
Molecular Weight (calculated)
32803.2 Da
IEP (calculated)
5.394
GRAVY (calculated)
-0.649
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRDRGGGGS SRSEIVGGTL DRKRINDALD KHLEKSAPST SRALKDKAVP STSVGAGKLH QQHIDHRDTR SSSSLATKNK CSDDESETDS EESDVSGSDG
101: EDTSWISWFC NLRGNEFFCE VDDEYIQDDF NLCGLSSQVP YYDYALDLIL DVESSHGDMF TEEQNELVES AAEMLYGLIH VRYILTSKGM AAMLEKYKNY
201: DFGRCPRVYC CGQPCLPVGQ SDIPRSSTVK IYCPRCEDIY YPRSKYQGNI DGAYFGTTFP HLYLMTYGHL KPQKPAQNYV PRVFGFKLHK T
101: EDTSWISWFC NLRGNEFFCE VDDEYIQDDF NLCGLSSQVP YYDYALDLIL DVESSHGDMF TEEQNELVES AAEMLYGLIH VRYILTSKGM AAMLEKYKNY
201: DFGRCPRVYC CGQPCLPVGQ SDIPRSSTVK IYCPRCEDIY YPRSKYQGNI DGAYFGTTFP HLYLMTYGHL KPQKPAQNYV PRVFGFKLHK T
001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ
Arabidopsis Description
CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.