Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES13385 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60250.1 | EES13385 | AT2G46830.1 | 10535927 |
| AT3G60250.1 | EES13385 | AT2G46830.1 | 14978263 |
| AT3G60250.1 | EES13385 | AT2G46830.1 | 9724822 |
| AT4G17640.1 | EES13385 | AT2G46830.1 | 9724822 |
| AT5G47080.1 | EES13385 | AT2G46830.1 | 9724822 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002778_P001 | Maize | nucleus | 79.86 | 92.5 |
| TraesCS2D01G388200.1 | Wheat | cytosol | 85.97 | 86.28 |
| TraesCS2B01G408900.1 | Wheat | cytosol | 85.97 | 86.28 |
| TraesCS2A01G390500.1 | Wheat | cytosol | 85.97 | 86.28 |
| HORVU2Hr1G092930.1 | Barley | cytosol | 85.97 | 86.28 |
| Solyc10g061940.1.1 | Tomato | mitochondrion | 33.45 | 79.49 |
| KRH57540 | Soybean | nucleus | 69.06 | 73.56 |
| GSMUA_AchrUn_... | Banana | cytosol | 71.22 | 70.71 |
| EER91910 | Sorghum | cytosol | 66.55 | 70.61 |
| GSMUA_Achr4P26360_001 | Banana | cytosol | 70.86 | 70.36 |
| KRH77278 | Soybean | nucleus | 71.94 | 70.18 |
| KRH04253 | Soybean | nucleus | 66.55 | 70.08 |
| GSMUA_Achr4P30080_001 | Banana | cytosol | 70.5 | 70.0 |
| KRH28210 | Soybean | nucleus | 71.94 | 69.93 |
| VIT_02s0012g00080.t01 | Wine grape | cytosol | 66.55 | 69.55 |
| KXG36270 | Sorghum | cytosol | 68.7 | 69.45 |
| Bra022101.1-P | Field mustard | cytosol | 67.99 | 68.23 |
| CDY28980 | Canola | cytosol | 67.63 | 67.87 |
| PGSC0003DMT400004353 | Potato | cytosol | 70.86 | 67.7 |
| AT5G47080.1 | Thale cress | cytosol | 69.78 | 67.6 |
| CDY40582 | Canola | cytosol | 66.91 | 67.39 |
| Solyc01g088740.2.1 | Tomato | cytosol | 69.06 | 67.13 |
| Bra003407.1-P | Field mustard | cytosol | 64.39 | 67.04 |
| CDY64765 | Canola | cytosol | 64.39 | 67.04 |
| KRH57536 | Soybean | cytosol | 61.87 | 66.93 |
| Solyc05g050680.2.1 | Tomato | nucleus | 68.35 | 66.67 |
| Bra007520.1-P | Field mustard | cytosol | 62.95 | 66.54 |
| CDY41181 | Canola | cytosol | 62.95 | 66.54 |
| KRH04249 | Soybean | nucleus | 62.59 | 66.41 |
| AT4G17640.1 | Thale cress | cytosol | 66.91 | 65.96 |
| CDX90462 | Canola | cytosol | 67.27 | 65.61 |
| PGSC0003DMT400068359 | Potato | cytosol | 67.27 | 65.61 |
| Bra000359.1-P | Field mustard | cytosol | 64.75 | 65.45 |
| CDX71824 | Canola | cytosol | 61.87 | 65.4 |
| Solyc06g061000.2.1 | Tomato | cytosol | 67.27 | 65.38 |
| CDX83421 | Canola | cytosol | 64.39 | 65.09 |
| CDY09612 | Canola | cytosol | 66.55 | 64.91 |
| CDX95610 | Canola | cytosol | 63.67 | 64.36 |
| AT2G44680.1 | Thale cress | cytosol | 65.47 | 64.31 |
| CDX77739 | Canola | cytosol | 57.55 | 64.26 |
| Bra004856.1-P | Field mustard | cytosol | 60.43 | 64.12 |
| GSMUA_Achr8P14950_001 | Banana | cytosol | 65.47 | 64.08 |
| CDX74677 | Canola | cytosol | 61.51 | 64.04 |
| CDY48249 | Canola | cytosol | 61.15 | 63.43 |
| AT3G60250.1 | Thale cress | cytosol | 61.87 | 62.32 |
| CDX78786 | Canola | cytosol | 62.59 | 62.14 |
| Bra040171.1-P | Field mustard | cytosol | 62.23 | 61.57 |
| CDY38414 | Canola | cytosol | 62.59 | 61.27 |
| GSMUA_Achr2P10400_001 | Banana | cytosol | 70.5 | 60.31 |
| VIT_15s0021g01020.t01 | Wine grape | cytosol | 62.23 | 56.54 |
| Bra025515.1-P | Field mustard | cytosol | 53.96 | 55.76 |
| CDY64781 | Canola | cytosol | 53.24 | 55.64 |
| CDY48948 | Canola | cytosol | 53.96 | 55.35 |
| PGSC0003DMT400018024 | Potato | mitochondrion | 60.07 | 54.05 |
| Bra025463.1-P | Field mustard | cytosol | 51.44 | 51.07 |
| GSMUA_Achr4P17850_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 42.09 | 50.0 |
| Solyc10g061930.1.1 | Tomato | nucleus | 29.14 | 48.8 |
| GSMUA_Achr4P17860_001 | Banana | cytosol | 30.22 | 47.73 |
| Bra012652.1-P | Field mustard | cytosol | 53.96 | 46.01 |
Protein Annotations
| Gene3D:1.10.1820.10 | MapMan:18.4.3.9.2 | Gene3D:2.20.25.20 | UniProt:A0A1B6PMC1 | InterPro:Casein_kin_II_reg-sub_N | InterPro:Casein_kinase_II_beta_like |
| InterPro:Casein_kinase_II_reg-sub | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005956 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019887 |
| GO:GO:0030234 | GO:GO:0045859 | InterPro:IPR016149 | ProteinID:KXG26816.1 | ProteinID:OQU82058.1 | EnsemblPlants:OQU82060 |
| ProteinID:OQU82060 | ProteinID:OQU82060.1 | PFAM:PF01214 | PRINTS:PR00472 | ScanProsite:PS01101 | PANTHER:PTHR11740 |
| PANTHER:PTHR11740:SF15 | SMART:SM01085 | EnsemblPlantsGene:SORBI_3006G164900 | SUPFAM:SSF57798 | UniParc:UPI0001C8058B | SEG:seg |
Description
hypothetical protein
Coordinates
chr6:-:52245086..52251734
Molecular Weight (calculated)
31154.5 Da
IEP (calculated)
4.849
GRAVY (calculated)
-0.532
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRDRGVSAA AVPGDRKRIG EPMDRSSPST SWGFSGGREK ERIGGGKQPE MSRSGGGSTA ISKSMLFDAE SETDSEESDV SGSDGEDTSW ISWFCSLRGN
101: EFFCEVDDEY IQDDFNLCGL SNQVPYYDYA LDLILDVESS HGDMFTEEQN ELIESAAEML YGLIHVRYII TSKGLSAMLD KYKNVDFGRC PRVNCSGQPC
201: LPVGQSDVPR SSMVKIYCPR CEDIYTPRSK HLSNIDIDGT YFGTTFPHLF LMTYPHVKPQ KPLQQYVPRV FGFKIHKP
101: EFFCEVDDEY IQDDFNLCGL SNQVPYYDYA LDLILDVESS HGDMFTEEQN ELIESAAEML YGLIHVRYII TSKGLSAMLD KYKNVDFGRC PRVNCSGQPC
201: LPVGQSDVPR SSMVKIYCPR CEDIYTPRSK HLSNIDIDGT YFGTTFPHLF LMTYPHVKPQ KPLQQYVPRV FGFKIHKP
001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ
Arabidopsis Description
CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.