Factsheet for Solyc10g061940.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G242000.2	Wheat	cytosol	89.74	39.03
Solyc05g050680.2.1	Tomato	nucleus	94.87	38.95
TraesCS2A01G245100.1	Wheat	cytosol	89.74	38.75
KXG36270	Sorghum	cytosol	89.74	38.18
Zm00001d021557_P001	Maize	cytosol	88.89	38.1
EER91910	Sorghum	cytosol	84.62	37.79
Solyc01g088740.2.1	Tomato	cytosol	91.45	37.41
Os07t0495100-01	Rice	cytosol	89.74	36.46
HORVU1Hr1G055250.1	Barley	cytosol	85.47	36.36
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	78.63	36.36
TraesCSU01G007300.1	Wheat	cytosol	85.47	36.36
TraesCS1B01G229200.1	Wheat	cytosol	85.47	36.36
TraesCS1A01G215700.1	Wheat	cytosol	85.47	36.36
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	78.63	36.22
Os10t0564900-01	Rice	cytosol	86.32	36.2
TraesCS2A01G390500.1	Wheat	cytosol	85.47	36.1
TraesCS2B01G408900.1	Wheat	cytosol	85.47	36.1
TraesCS2D01G388200.1	Wheat	cytosol	85.47	36.1
HORVU2Hr1G092930.1	Barley	cytosol	85.47	36.1
Zm00001d006440_P003	Maize	cytosol	88.89	34.44
OQU82060	Sorghum	cytosol	79.49	33.45
Solyc06g061000.2.1	Tomato	cytosol	81.2	33.22
HORVU4Hr1G090280.3	Barley	cytosol	76.07	32.84
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	56.41	30.28
Zm00001d029978_P001	Maize	cytosol	56.41	30.0
Zm00001d002778_P001	Maize	nucleus	53.85	26.25
VIT_15s0021g01020.t01	Wine grape	cytosol	65.81	25.16
Zm00001d000052_P004	Maize	cytosol	56.41	22.84
Solyc10g061930.1.1	Tomato	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.1820.10	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005956	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234
GO:GO:0045859	InterPro:IPR016149	UniProt:K4D1I4	PFAM:PF01214	PRINTS:PR00472	ScanProsite:PS01101
PANTHER:PTHR11740	PANTHER:PTHR11740:SF15	SMART:SM01085	SUPFAM:SSF57798	EnsemblPlantsGene:Solyc10g061940.1	EnsemblPlants:Solyc10g061940.1.1
UniParc:UPI0002769755	:	:	:	:	:

Description

Casein kinase II subunit beta [Source:UniProtKB/TrEMBL;Acc:K4D1I4]

Coordinates

chr10:+:23448681..23449801

Molecular Weight (calculated)

13546.6 Da

IEP (calculated)

9.735

GRAVY (calculated)

-0.349

Length

117 amino acids

Sequence
(BLAST)

001: MLYGLIHVRY ILTSKGMAAM LGKYKNYDFG RCPRVYCSGQ PCLPVGQSDI PRSSTVKIYC PKCEDIYYPR SKYQDIDGAY FGTTFPHLFL MTYGHLKPQK
101: PTQNYVPRVF GFKIHRT

Best Arabidopsis Sequence Match ( AT2G44680.2 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQDI DGAYFGTTFP HLFLMAYGNM KPQKPAQNYV PKIFGFKVHN KQ

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.