Factsheet for Solyc06g061000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068359	Potato	cytosol	97.55	97.89
Solyc10g061940.1.1	Tomato	mitochondrion	33.22	81.2
VIT_02s0012g00080.t01	Wine grape	cytosol	72.38	77.82
TraesCS2D01G242000.2	Wheat	cytosol	72.73	77.32
Zm00001d021557_P001	Maize	cytosol	73.43	76.92
TraesCS2A01G245100.1	Wheat	cytosol	72.73	76.75
KXG36270	Sorghum	cytosol	72.73	75.64
Os07t0495100-01	Rice	cytosol	74.48	73.96
Solyc01g088740.2.1	Tomato	cytosol	72.03	72.03
Solyc05g050680.2.1	Tomato	nucleus	71.68	71.93
EER91910	Sorghum	cytosol	65.73	71.76
TraesCSU01G007300.1	Wheat	cytosol	67.83	70.55
TraesCS1A01G215700.1	Wheat	cytosol	67.83	70.55
TraesCS1B01G229200.1	Wheat	cytosol	67.83	70.55
HORVU1Hr1G055250.1	Barley	cytosol	67.48	70.18
Os10t0564900-01	Rice	cytosol	67.48	69.18
Zm00001d029978_P001	Maize	cytosol	53.15	69.09
TraesCS2A01G390500.1	Wheat	cytosol	66.78	68.95
TraesCS2B01G408900.1	Wheat	cytosol	66.78	68.95
TraesCS2D01G388200.1	Wheat	cytosol	66.78	68.95
HORVU2Hr1G092930.1	Barley	cytosol	66.78	68.95
Zm00001d006440_P003	Maize	cytosol	71.68	67.88
OQU82060	Sorghum	cytosol	65.38	67.27
Zm00001d002778_P001	Maize	nucleus	55.59	66.25
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	56.64	64.03
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	56.29	63.39
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	46.85	61.47
HORVU4Hr1G090280.3	Barley	cytosol	55.94	59.04
Solyc10g061930.1.1	Tomato	nucleus	31.47	54.22
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	42.66	52.14
Zm00001d000052_P004	Maize	cytosol	52.45	51.9

Protein Annotations

Gene3D:1.10.1820.10	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005956	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234
GO:GO:0045859	InterPro:IPR016149	UniProt:K4C6T0	PFAM:PF01214	PRINTS:PR00472	PANTHER:PTHR11740
PANTHER:PTHR11740:SF15	SMART:SM01085	SUPFAM:SSF57798	EnsemblPlantsGene:Solyc06g061000.2	EnsemblPlants:Solyc06g061000.2.1	UniParc:UPI000276656F
SEG:seg	:	:	:	:	:

Description

Casein kinase II subunit beta [Source:UniProtKB/TrEMBL;Acc:K4C6T0]

Coordinates

chr6:+:38969939..38976999

Molecular Weight (calculated)

32295.7 Da

IEP (calculated)

5.634

GRAVY (calculated)

-0.681

Length

286 amino acids

Sequence
(BLAST)

001: MYKERRVGGG SKPEMGRVGD RKRLNEALDK HLERSSPSTS TTTVRGTNGK DHRFALSKSK DQLRNSAPPP PPDNKCSDAE SETDSEASDI SGSDGEDTSW
101: ISWYCGLRGN EFFCEVDDDY IQDDFNLCGL SSLVPYYDYA LDLILDVESS HGDMFTEEQN ELVESAAEML YGLIHARYIL TTKGLAAMLE KYKNAEFGRC
201: PRVYCCGQPC LPVGQSDIPR QSRVNIYCPR CEDAYTPRSR YHENIDGAYF GTTFPHLFLM TYGHLKPQKI SQSYVPRVFG FKVHKP

Best Arabidopsis Sequence Match ( AT2G44680.1 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.