Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G299400.3 | |
| TraesCS7B01G188000.1 | |
| TraesCS7D01G295400.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G215700.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCSU01G007300.1 | Wheat | cytosol | 100.0 | 100.0 |
| HORVU1Hr1G055250.1 | Barley | cytosol | 99.27 | 99.27 |
| Os10t0564900-01 | Rice | cytosol | 87.64 | 86.38 |
| EER91910 | Sorghum | cytosol | 81.45 | 85.5 |
| Solyc10g061940.1.1 | Tomato | mitochondrion | 36.36 | 85.47 |
| Zm00001d029978_P001 | Maize | cytosol | 68.0 | 85.0 |
| KRH57540 | Soybean | nucleus | 72.36 | 76.25 |
| GSMUA_AchrUn_... | Banana | cytosol | 76.73 | 75.36 |
| GSMUA_Achr4P30080_001 | Banana | cytosol | 76.0 | 74.64 |
| VIT_02s0012g00080.t01 | Wine grape | cytosol | 72.0 | 74.44 |
| GSMUA_Achr4P26360_001 | Banana | cytosol | 75.64 | 74.29 |
| KRH04253 | Soybean | nucleus | 70.91 | 73.86 |
| TraesCS2B01G408900.1 | Wheat | cytosol | 72.36 | 71.84 |
| Bra000359.1-P | Field mustard | cytosol | 71.27 | 71.27 |
| Bra003407.1-P | Field mustard | cytosol | 69.09 | 71.16 |
| CDY64765 | Canola | cytosol | 69.09 | 71.16 |
| CDX83421 | Canola | cytosol | 70.91 | 70.91 |
| KRH57536 | Soybean | cytosol | 66.18 | 70.82 |
| CDY41181 | Canola | cytosol | 67.64 | 70.72 |
| Bra007520.1-P | Field mustard | cytosol | 67.64 | 70.72 |
| KRH04249 | Soybean | nucleus | 67.27 | 70.61 |
| KRH77278 | Soybean | nucleus | 73.09 | 70.53 |
| KRH28210 | Soybean | nucleus | 73.09 | 70.28 |
| CDX95610 | Canola | cytosol | 70.18 | 70.18 |
| Solyc05g050680.2.1 | Tomato | nucleus | 72.73 | 70.18 |
| CDX71824 | Canola | cytosol | 66.91 | 69.96 |
| Solyc01g088740.2.1 | Tomato | cytosol | 72.73 | 69.93 |
| PGSC0003DMT400004353 | Potato | cytosol | 73.45 | 69.42 |
| GSMUA_Achr8P14950_001 | Banana | cytosol | 71.27 | 69.01 |
| CDX74677 | Canola | cytosol | 66.91 | 68.91 |
| Bra004856.1-P | Field mustard | cytosol | 65.45 | 68.7 |
| CDY48249 | Canola | cytosol | 66.55 | 68.28 |
| PGSC0003DMT400068359 | Potato | cytosol | 70.55 | 68.07 |
| AT2G44680.1 | Thale cress | cytosol | 69.82 | 67.84 |
| Solyc06g061000.2.1 | Tomato | cytosol | 70.55 | 67.83 |
| AT5G47080.1 | Thale cress | cytosol | 70.18 | 67.25 |
| AT3G60250.1 | Thale cress | cytosol | 67.27 | 67.03 |
| Bra022101.1-P | Field mustard | cytosol | 67.27 | 66.79 |
| TraesCS4B01G379300.1 | Wheat | cytosol, mitochondrion | 52.73 | 66.51 |
| CDX78786 | Canola | cytosol | 67.64 | 66.43 |
| CDY28980 | Canola | cytosol | 66.91 | 66.43 |
| Bra040171.1-P | Field mustard | cytosol | 67.27 | 65.84 |
| CDY40582 | Canola | cytosol | 65.82 | 65.58 |
| CDY38414 | Canola | cytosol | 66.55 | 64.44 |
| GSMUA_Achr2P10400_001 | Banana | cytosol | 75.64 | 64.0 |
| CDY09612 | Canola | cytosol | 66.18 | 63.86 |
| CDX90462 | Canola | cytosol | 66.18 | 63.86 |
| AT4G17640.1 | Thale cress | cytosol | 65.09 | 63.48 |
| CDX77739 | Canola | cytosol | 56.36 | 62.25 |
| Zm00001d000052_P004 | Maize | cytosol | 65.09 | 61.94 |
| CDY64781 | Canola | cytosol | 55.27 | 57.14 |
| VIT_15s0021g01020.t01 | Wine grape | cytosol | 62.91 | 56.54 |
| Bra025515.1-P | Field mustard | cytosol | 54.55 | 55.76 |
| CDY48948 | Canola | cytosol | 54.55 | 55.35 |
| PGSC0003DMT400018024 | Potato | mitochondrion | 62.18 | 55.34 |
| GSMUA_Achr4P17850_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 46.91 | 55.13 |
| Bra025463.1-P | Field mustard | cytosol | 53.82 | 52.86 |
| Solyc10g061930.1.1 | Tomato | nucleus | 29.45 | 48.8 |
| GSMUA_Achr4P17860_001 | Banana | cytosol | 28.73 | 44.89 |
| Bra012652.1-P | Field mustard | cytosol | 52.36 | 44.17 |
Protein Annotations
| Gene3D:1.10.1820.10 | MapMan:18.4.3.9.2 | Gene3D:2.20.25.20 | InterPro:Casein_kin_II_reg-sub_N | InterPro:Casein_kinase_II_beta_like | InterPro:Casein_kinase_II_reg-sub |
| GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005956 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019887 | GO:GO:0030234 |
| InterPro:IPR016149 | PFAM:PF01214 | PRINTS:PR00472 | ScanProsite:PS01101 | PANTHER:PTHR11740 | PANTHER:PTHR11740:SF5 |
| SMART:SM01085 | SUPFAM:SSF57798 | EnsemblPlantsGene:TraesCS1B01G229200 | EnsemblPlants:TraesCS1B01G229200.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr1B:-:411568098..411574187
Molecular Weight (calculated)
31029.3 Da
IEP (calculated)
4.874
GRAVY (calculated)
-0.549
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGAAYRDRG FGGAAEMDRK RIKEALEKHT ERPSPSTSRG ASREKELLAA GKITTQIGKV PKVSDVEEFE TDSEDSDVSG SEGEDTSWIS WFCSLRGNEF
101: FCEIDDDYIQ DDFNLCGLSS QVPYYDYALD LILDIESSNG DVFTEEQNEL IESSAEMLYG LIHARYILTS KGLAAMLEKF KNYDFGRCPR VYCCGQPCLP
201: AGQSDIPRSS TVKVFCPKCE DLHYPRSKYQ GNIDGAYFGT TFPHLFLMTY PHLKPQKPSQ QYVPRVFGFK LHKQS
101: FCEIDDDYIQ DDFNLCGLSS QVPYYDYALD LILDIESSNG DVFTEEQNEL IESSAEMLYG LIHARYILTS KGLAAMLEKF KNYDFGRCPR VYCCGQPCLP
201: AGQSDIPRSS TVKVFCPKCE DLHYPRSKYQ GNIDGAYFGT TFPHLFLMTY PHLKPQKPSQ QYVPRVFGFK LHKQS
001: MYRDRGTVNS RPEVVDRKRI NDALERPSPS TSRQVNGKGK GTVTAATTTA NLIGKQQSNN INHRDSRSAS LSKNNTVSDD ESDTDSEESD VSGSDGEDTS
101: WISWFCNLRG NEFFCEVDDD YIQDDFNLCG LSSLVPYYEY ALDLILDVES SQGEMFTEEQ NELIESAAEM LYGLIHARYI LTSKGLAAML DKYKNYDFGR
201: CPRVYCCGQP CLPVGQSDLP RSSTVKIYCP KCEDIYYPRS KYQGNIDGAY FGTTFPHLFL MTYGHLKPAK ATQNYVQRVF GFKLHKP
101: WISWFCNLRG NEFFCEVDDD YIQDDFNLCG LSSLVPYYEY ALDLILDVES SQGEMFTEEQ NELIESAAEM LYGLIHARYI LTSKGLAAML DKYKNYDFGR
201: CPRVYCCGQP CLPVGQSDLP RSSTVKIYCP KCEDIYYPRS KYQGNIDGAY FGTTFPHLFL MTYGHLKPAK ATQNYVQRVF GFKLHKP
Arabidopsis Description
CKB1Casein kinase II subunit beta-1 [Source:UniProtKB/Swiss-Prot;Acc:P40228]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.