Factsheet for GSMUA_Achr4P17860_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P26360_001	Banana	cytosol	61.93	38.93
GSMUA_AchrUn_...	Banana	cytosol	57.95	36.43
GSMUA_Achr4P30080_001	Banana	cytosol	57.39	36.07
Zm00001d002778_P001	Maize	nucleus	48.86	35.83
Zm00001d029978_P001	Maize	cytosol	44.32	35.45
GSMUA_Achr2P10400_001	Banana	cytosol	59.09	32.0
Zm00001d021557_P001	Maize	cytosol	49.43	31.87
GSMUA_Achr8P14950_001	Banana	cytosol	51.14	31.69
KXG36270	Sorghum	cytosol	49.43	31.64
TraesCS2D01G242000.2	Wheat	cytosol	47.73	31.23
TraesCS2A01G245100.1	Wheat	cytosol	47.73	31.0
TraesCS2A01G390500.1	Wheat	cytosol	48.3	30.69
TraesCS2D01G388200.1	Wheat	cytosol	48.3	30.69
TraesCS2B01G408900.1	Wheat	cytosol	48.3	30.69
HORVU2Hr1G092930.1	Barley	cytosol	48.3	30.69
OQU82060	Sorghum	cytosol	47.73	30.22
Os07t0495100-01	Rice	cytosol	48.86	29.86
Os10t0564900-01	Rice	cytosol	46.02	29.03
EER91910	Sorghum	cytosol	43.18	29.01
Zm00001d006440_P003	Maize	cytosol	49.43	28.81
TraesCS1B01G229200.1	Wheat	cytosol	44.89	28.73
TraesCSU01G007300.1	Wheat	cytosol	44.89	28.73
TraesCS1A01G215700.1	Wheat	cytosol	44.89	28.73
HORVU1Hr1G055250.1	Barley	cytosol	44.32	28.36
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	34.09	27.52
Zm00001d000052_P004	Maize	cytosol	44.32	26.99
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	35.8	24.9
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	35.23	24.41
HORVU4Hr1G090280.3	Barley	cytosol	36.36	23.62
GSMUA_Achr6P11870_001	Banana	cytosol, plastid	29.55	17.93
GSMUA_Achr2P21300_001	Banana	cytosol	27.27	17.02
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	11.36	8.55

Protein Annotations

Gene3D:1.10.1820.10	MapMan:18.4.3.9.2	InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub	GO:GO:0003674
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005956	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234	GO:GO:0045859
EnsemblPlantsGene:GSMUA_Achr4G17860_001	EnsemblPlants:GSMUA_Achr4P17860_001	EnsemblPlants:GSMUA_Achr4T17860_001	InterPro:IPR016149	UniProt:M0SPU9	PFAM:PF01214
PRINTS:PR00472	PANTHER:PTHR11740	PANTHER:PTHR11740:SF15	SMART:SM01085	SUPFAM:SSF57798	UniParc:UPI0002952CE8
SEG:seg	:	:	:	:	:

Description

Casein kinase II subunit beta [Source:GMGC_GENE;Acc:GSMUA_Achr4G17860_001]

Coordinates

chr4:-:18193989..18199279

Molecular Weight (calculated)

19873.8 Da

IEP (calculated)

5.110

GRAVY (calculated)

-0.810

Length

176 amino acids

Sequence
(BLAST)

001: MHRDRGGNGS RVETGASYRR RINGALDKHL ERSSTATSEV LNRRERERDR LSVPSTSSGK HLEHQDQRSA SLSKNKYSDE SETDSEESDV SGSDGEDTSW
101: ISWLCNLKGN EFFCEVDDEY IQDDFNLCGL SSQVPYYAYA LDLILDVEPS HASVKIIICS FTQINALRIP TKHKLP

Best Arabidopsis Sequence Match ( AT2G44680.2 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQDI DGAYFGTTFP HLFLMAYGNM KPQKPAQNYV PKIFGFKVHN KQ

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.