Factsheet for GSMUA_Achr6P11870_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P21300_001	Banana	cytosol	62.41	64.18
GSMUA_Achr4P26360_001	Banana	cytosol	51.38	53.21
GSMUA_AchrUn_...	Banana	cytosol	51.38	53.21
GSMUA_Achr4P30080_001	Banana	cytosol	51.03	52.86
GSMUA_Achr8P14950_001	Banana	cytosol	47.93	48.94
GSMUA_Achr2P10400_001	Banana	cytosol	51.72	46.15
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	33.1	41.03
GSMUA_Achr4P17860_001	Banana	cytosol	17.93	29.55

Protein Annotations

Gene3D:1.10.1820.10	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005956	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234
GO:GO:0045859	EnsemblPlantsGene:GSMUA_Achr6G11870_001	EnsemblPlants:GSMUA_Achr6P11870_001	EnsemblPlants:GSMUA_Achr6T11870_001	InterPro:IPR016149	UniProt:M0T685
PFAM:PF01214	PRINTS:PR00472	ScanProsite:PS01101	PANTHER:PTHR11740	PANTHER:PTHR11740:SF15	SMART:SM01085
SUPFAM:SSF57798	UniParc:UPI0002949BC6	SEG:seg	:	:	:

Description

casein kinase II subunit beta-4, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G11870_001]

Coordinates

chr6:-:7852372..7856263

Molecular Weight (calculated)

31891.6 Da

IEP (calculated)

5.907

GRAVY (calculated)

-0.446

Length

290 amino acids

Sequence
(BLAST)

001: MLKTGSTSRD KAARSNANAN PSMGSAMETI SKASLKVPLP NAGSKKRSDG ASTSVLLKSK EVKLKNSKPT PELAEIGSEE TDLSTSEGYD SSWISWFCGL
101: RGNELLCEID EDYIQDDFNL CGLQGLVPYY DYALDVILDN DSLSGDIDGE EHSQVESAAE QLYGLIHARY IVTSRGLNAM HEKYKKADFG CCPRVFCGGQ
201: PCLPVGTSDI PHNGSVKIYC PKCEDVYFPR CKYQSNMDGA YIGTTFPHLY LMTYPTSKPP AEVQHYVPKV FGFKLHKGTK QLFDTSTNTL

Best Arabidopsis Sequence Match ( AT2G44680.1 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.