Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G299400.3 | |
| TraesCS7B01G188000.1 | |
| TraesCS7D01G295400.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G129600.1 | Wheat | cytosol, mitochondrion | 98.03 | 98.42 |
| TraesCS4B01G379300.1 | Wheat | cytosol, mitochondrion | 81.1 | 94.5 |
| HORVU4Hr1G090280.3 | Barley | cytosol | 94.88 | 88.93 |
| Solyc10g061940.1.1 | Tomato | mitochondrion | 36.22 | 78.63 |
| KRH57540 | Soybean | nucleus | 68.9 | 67.05 |
| KRH04253 | Soybean | nucleus | 67.32 | 64.77 |
| TraesCS2A01G245100.1 | Wheat | cytosol | 66.93 | 62.73 |
| Bra003407.1-P | Field mustard | cytosol | 65.75 | 62.55 |
| CDY64765 | Canola | cytosol | 65.75 | 62.55 |
| TraesCS1A01G215700.1 | Wheat | cytosol | 67.32 | 62.18 |
| VIT_02s0012g00080.t01 | Wine grape | cytosol | 64.96 | 62.03 |
| CDY41181 | Canola | cytosol | 64.17 | 61.98 |
| Bra007520.1-P | Field mustard | cytosol | 64.17 | 61.98 |
| Bra004856.1-P | Field mustard | cytosol | 63.78 | 61.83 |
| GSMUA_AchrUn_... | Banana | cytosol | 68.11 | 61.79 |
| Bra000359.1-P | Field mustard | cytosol | 66.54 | 61.45 |
| CDX83421 | Canola | cytosol | 66.54 | 61.45 |
| CDX95610 | Canola | cytosol | 66.54 | 61.45 |
| CDX74677 | Canola | cytosol | 64.57 | 61.42 |
| CDY48249 | Canola | cytosol | 64.57 | 61.19 |
| KRH77278 | Soybean | nucleus | 68.5 | 61.05 |
| KRH28210 | Soybean | nucleus | 68.5 | 60.84 |
| CDX71824 | Canola | cytosol | 62.6 | 60.46 |
| GSMUA_Achr4P26360_001 | Banana | cytosol | 66.54 | 60.36 |
| AT2G44680.1 | Thale cress | cytosol | 66.93 | 60.07 |
| GSMUA_Achr4P30080_001 | Banana | cytosol | 66.14 | 60.0 |
| KRH57536 | Soybean | cytosol | 60.24 | 59.53 |
| AT3G60250.1 | Thale cress | cytosol | 64.57 | 59.42 |
| Solyc05g050680.2.1 | Tomato | nucleus | 66.54 | 59.3 |
| KRH04249 | Soybean | nucleus | 61.02 | 59.16 |
| TraesCS2A01G390500.1 | Wheat | cytosol | 63.39 | 58.12 |
| Solyc01g088740.2.1 | Tomato | cytosol | 65.35 | 58.04 |
| CDX78786 | Canola | cytosol | 63.39 | 57.5 |
| PGSC0003DMT400004353 | Potato | cytosol | 65.75 | 57.39 |
| GSMUA_Achr8P14950_001 | Banana | cytosol | 63.78 | 57.04 |
| Bra040171.1-P | Field mustard | cytosol | 62.99 | 56.94 |
| PGSC0003DMT400068359 | Potato | cytosol | 63.39 | 56.49 |
| Bra022101.1-P | Field mustard | cytosol | 61.42 | 56.32 |
| Solyc06g061000.2.1 | Tomato | cytosol | 63.39 | 56.29 |
| CDY28980 | Canola | cytosol | 61.02 | 55.96 |
| CDY38414 | Canola | cytosol | 62.2 | 55.63 |
| CDY40582 | Canola | cytosol | 60.24 | 55.43 |
| AT5G47080.1 | Thale cress | cytosol | 62.6 | 55.4 |
| AT4G17640.1 | Thale cress | cytosol | 58.27 | 52.48 |
| GSMUA_Achr2P10400_001 | Banana | cytosol | 66.93 | 52.31 |
| CDY09612 | Canola | cytosol | 58.66 | 52.28 |
| CDX90462 | Canola | cytosol | 57.87 | 51.58 |
| CDX77739 | Canola | cytosol | 48.43 | 49.4 |
| CDY64781 | Canola | cytosol | 50.79 | 48.5 |
| PGSC0003DMT400018024 | Potato | mitochondrion | 58.27 | 47.9 |
| GSMUA_Achr4P17850_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 44.09 | 47.86 |
| CDY48948 | Canola | cytosol | 50.79 | 47.6 |
| VIT_15s0021g01020.t01 | Wine grape | cytosol | 57.09 | 47.39 |
| Bra025515.1-P | Field mustard | cytosol | 50.0 | 47.21 |
| Bra025463.1-P | Field mustard | cytosol | 50.39 | 45.71 |
| Solyc10g061930.1.1 | Tomato | nucleus | 25.2 | 38.55 |
| Bra012652.1-P | Field mustard | cytosol | 45.28 | 35.28 |
| GSMUA_Achr4P17860_001 | Banana | cytosol | 24.41 | 35.23 |
Protein Annotations
| Gene3D:1.10.1820.10 | MapMan:18.4.3.9.2 | Gene3D:2.20.25.20 | InterPro:Casein_kin_II_reg-sub_N | InterPro:Casein_kinase_II_beta_like | InterPro:Casein_kinase_II_reg-sub |
| GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005956 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019887 | GO:GO:0030234 |
| InterPro:IPR016149 | PFAM:PF01214 | PRINTS:PR00472 | ScanProsite:PS01101 | PANTHER:PTHR11740 | PANTHER:PTHR11740:SF5 |
| SMART:SM01085 | SUPFAM:SSF57798 | EnsemblPlantsGene:TraesCS5A01G545600 | EnsemblPlants:TraesCS5A01G545600.3 | SEG:seg | : |
Description
No Description!
Coordinates
chr5A:+:700439337..700441167
Molecular Weight (calculated)
28357.5 Da
IEP (calculated)
6.390
GRAVY (calculated)
-0.515
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRKRINDAL DRHLRAATER SSPSTSRAAA KPKPPSAAAP KPKEQLDSDS SEGGSAGGPS EADDTFWINW FCAMRGNEFF AEVDDDYIQD DFNLCGLSAQ
101: VPYYDHALDL ILDLEPVQGD VFADDQNELI VASAEMLYGL IHARYILTTK GLAAMLEKFK NCDFGRCPRV SCSGQPCLPM GQSDIPRSST VKIYCPKCED
201: LYYPRSKHQA NTDGAYFGTT FPHIFMMTHS QLKPQKPAQQ YVPRIFGFKV HKKT
101: VPYYDHALDL ILDLEPVQGD VFADDQNELI VASAEMLYGL IHARYILTTK GLAAMLEKFK NCDFGRCPRV SCSGQPCLPM GQSDIPRSST VKIYCPKCED
201: LYYPRSKHQA NTDGAYFGTT FPHIFMMTHS QLKPQKPAQQ YVPRIFGFKV HKKT
001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ
Arabidopsis Description
CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.