CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57536	Soybean	cytosol	94.27	96.11
KRH57540	Soybean	nucleus	76.72	77.01
KRH04253	Soybean	nucleus	75.19	74.62
KRH77278	Soybean	nucleus	78.24	71.93
KRH28210	Soybean	nucleus	78.24	71.68
TraesCS2D01G242000.2	Wheat	cytosol	71.37	69.52
TraesCS2A01G245100.1	Wheat	cytosol	71.37	69.0
Zm00001d021557_P001	Maize	cytosol	70.99	68.13
KXG36270	Sorghum	cytosol	70.99	67.64
EER91910	Sorghum	cytosol	67.56	67.56
TraesCSU01G007300.1	Wheat	cytosol	70.61	67.27
TraesCS1B01G229200.1	Wheat	cytosol	70.61	67.27
TraesCS1A01G215700.1	Wheat	cytosol	70.61	67.27
HORVU1Hr1G055250.1	Barley	cytosol	70.23	66.91
Zm00001d029978_P001	Maize	cytosol	56.11	66.82
Os10t0564900-01	Rice	cytosol	69.85	65.59
Os07t0495100-01	Rice	cytosol	70.99	64.58
TraesCS2A01G390500.1	Wheat	cytosol	67.56	63.9
TraesCS2B01G408900.1	Wheat	cytosol	67.56	63.9
TraesCS2D01G388200.1	Wheat	cytosol	67.56	63.9
HORVU2Hr1G092930.1	Barley	cytosol	67.56	63.9
OQU82060	Sorghum	cytosol	66.41	62.59
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	59.16	61.26
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	59.16	61.02
Zm00001d002778_P001	Maize	nucleus	55.34	60.42
Zm00001d006440_P003	Maize	cytosol	69.47	60.26
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	49.24	59.17
HORVU4Hr1G090280.3	Barley	cytosol	58.02	56.09
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	47.71	53.42
Zm00001d000052_P004	Maize	cytosol	54.58	49.48

Protein Annotations

Gene3D:1.10.1820.10	EntrezGene:100784315	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	UniProt:A0A0R0FMD1	EMBL:ACUP02010393
InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub	EnsemblPlantsGene:GLYMA_17G149300	GO:GO:0003674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005956	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234	GO:GO:0045859	InterPro:IPR016149
EnsemblPlants:KRH04249	ProteinID:KRH04249	ProteinID:KRH04249.1	PFAM:PF01214	PRINTS:PR00472	ScanProsite:PS01101
PANTHER:PTHR11740	PANTHER:PTHR11740:SF15	SMART:SM01085	SUPFAM:SSF57798	UniParc:UPI0003DE9205	SEG:seg

Description

hypothetical protein

Coordinates

chr17:+:12378471..12382076

Molecular Weight (calculated)

30125.2 Da

IEP (calculated)

5.166

GRAVY (calculated)

-0.630

Length

262 amino acids

Sequence
(BLAST)

001: MNDYKGREGE SSVVVRKRFK EKQQQQQQQP FPSTRAIINQ QHRRCASLPN NTQYEESETD VEVSDVSVSE GDDTSWISWF CNLRGNEFFC EVDDDFVQDD
101: FNLCGLSSQV PYYDYALDLI LDVESSHGDT FTEDQNELIE SAAEMLYGLI HARYILTSKG MAAMLHKYKN YDFGRCPRVF CSGQPCLPVG QSDVPRSSTV
201: KIYCPRCEDI YYPKSKYQGN IDGAYFGATF PHLFLMTYGN LKPQKQSQNY VPRVFGFKVH KS

Best Arabidopsis Sequence Match ( AT2G44680.1 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.