CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04253	Soybean	nucleus	93.49	92.42
KRH77278	Soybean	nucleus	88.12	80.7
KRH28210	Soybean	nucleus	88.12	80.42
KRH57536	Soybean	cytosol	75.86	77.04
TraesCS2D01G242000.2	Wheat	cytosol	79.31	76.95
Zm00001d021557_P001	Maize	cytosol	80.46	76.92
KRH04249	Soybean	nucleus	77.01	76.72
TraesCS2A01G245100.1	Wheat	cytosol	79.31	76.38
KXG36270	Sorghum	cytosol	80.46	76.36
EER91910	Sorghum	cytosol	75.1	74.81
Zm00001d029978_P001	Maize	cytosol	61.3	72.73
TraesCS1B01G229200.1	Wheat	cytosol	76.25	72.36
TraesCSU01G007300.1	Wheat	cytosol	76.25	72.36
TraesCS1A01G215700.1	Wheat	cytosol	76.25	72.36
Os10t0564900-01	Rice	cytosol	77.01	72.04
HORVU1Hr1G055250.1	Barley	cytosol	75.86	72.0
Os07t0495100-01	Rice	cytosol	79.31	71.88
TraesCS2A01G390500.1	Wheat	cytosol	75.48	71.12
TraesCS2B01G408900.1	Wheat	cytosol	75.48	71.12
TraesCS2D01G388200.1	Wheat	cytosol	75.48	71.12
HORVU2Hr1G092930.1	Barley	cytosol	75.48	71.12
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	67.05	69.17
OQU82060	Sorghum	cytosol	73.56	69.06
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	67.05	68.9
Zm00001d006440_P003	Maize	cytosol	79.69	68.87
Zm00001d002778_P001	Maize	nucleus	61.69	67.08
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	55.56	66.51
HORVU4Hr1G090280.3	Barley	cytosol	65.13	62.73
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	50.19	55.98
Zm00001d000052_P004	Maize	cytosol	59.0	53.29

Protein Annotations

Gene3D:1.10.1820.10	EntrezGene:100793573	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	EMBL:ACUP02002855	InterPro:Casein_kin_II_reg-sub_N
InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub	EnsemblPlantsGene:GLYMA_05G067300	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005956	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019887	GO:GO:0030234	GO:GO:0045859	UniProt:I1K0X7	InterPro:IPR016149
EnsemblPlants:KRH57540	ProteinID:KRH57540	ProteinID:KRH57540.1	PFAM:PF01214	PRINTS:PR00472	ScanProsite:PS01101
PANTHER:PTHR11740	PANTHER:PTHR11740:SF15	SMART:SM01085	SUPFAM:SSF57798	UniParc:UPI000233A3CF	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:6809642..6812552

Molecular Weight (calculated)

29686.6 Da

IEP (calculated)

4.676

GRAVY (calculated)

-0.608

Length

261 amino acids

Sequence
(BLAST)

001: MYKERERVGV SVSASKSEDR KRINDVLDKH LERSSPSTSR PITSASKNSN LQVEESETES EESDVSGSDG DDTSWISWFC NLRGNEFFCE VDDDYIQDDF
101: NLCGLSSQVP YYDYALDLIL DVESSHGDMF TEEQNELIES AAEMLYGLIH ARYVLTSKGM AAMLDKYKNY DFGRCPRVYC SGQPCLPVGQ SDIPRSSTVK
201: IYCPRCEDLY YPRSKYQGNI DGAYFGTTFP HLFLMTYGQL KPQKPAQGYV PRVFGFKVHK P

Best Arabidopsis Sequence Match ( AT2G44680.1 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.