CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57540	Soybean	nucleus	92.42	93.49
KRH77278	Soybean	nucleus	85.23	78.95
KRH28210	Soybean	nucleus	85.23	78.67
TraesCS2D01G242000.2	Wheat	cytosol	78.03	76.58
TraesCS2A01G245100.1	Wheat	cytosol	78.03	76.01
Zm00001d021557_P001	Maize	cytosol	78.03	75.46
KRH04249	Soybean	nucleus	74.62	75.19
KRH57536	Soybean	cytosol	73.11	75.1
KXG36270	Sorghum	cytosol	78.03	74.91
EER91910	Sorghum	cytosol	72.73	73.28
Zm00001d029978_P001	Maize	cytosol	59.47	71.36
TraesCS1B01G229200.1	Wheat	cytosol	73.86	70.91
TraesCSU01G007300.1	Wheat	cytosol	73.86	70.91
TraesCS1A01G215700.1	Wheat	cytosol	73.86	70.91
Os07t0495100-01	Rice	cytosol	77.27	70.83
Os10t0564900-01	Rice	cytosol	74.62	70.61
HORVU1Hr1G055250.1	Barley	cytosol	73.48	70.55
TraesCS2A01G390500.1	Wheat	cytosol	71.59	68.23
TraesCS2B01G408900.1	Wheat	cytosol	71.59	68.23
TraesCS2D01G388200.1	Wheat	cytosol	71.59	68.23
HORVU2Hr1G092930.1	Barley	cytosol	71.59	68.23
Zm00001d006440_P003	Maize	cytosol	77.65	67.88
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	64.77	67.59
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	64.77	67.32
OQU82060	Sorghum	cytosol	70.08	66.55
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	53.79	65.14
Zm00001d002778_P001	Maize	nucleus	58.33	64.17
HORVU4Hr1G090280.3	Barley	cytosol	62.88	61.25
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	48.86	55.13
Zm00001d000052_P004	Maize	cytosol	57.58	52.6

Protein Annotations

Gene3D:1.10.1820.10	EntrezGene:100784848	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	EMBL:ACUP02010393	InterPro:Casein_kin_II_reg-sub_N
InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub	EnsemblPlantsGene:GLYMA_17G149500	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005956	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019887	GO:GO:0030234	GO:GO:0045859	UniProt:I1MV91	InterPro:IPR016149
EnsemblPlants:KRH04253	ProteinID:KRH04253	ProteinID:KRH04253.1	PFAM:PF01214	PRINTS:PR00472	ScanProsite:PS01101
PANTHER:PTHR11740	PANTHER:PTHR11740:SF15	SMART:SM01085	SUPFAM:SSF57798	UniParc:UPI00023D5300	SEG:seg

Description

hypothetical protein

Coordinates

chr17:+:12397400..12400444

Molecular Weight (calculated)

29977.0 Da

IEP (calculated)

4.617

GRAVY (calculated)

-0.570

Length

264 amino acids

Sequence
(BLAST)

001: MYKERERGGV SVSASKSEDR KRINDVLDKH LERSSPSTSR PINTASKNSN LQVEESETES EESDVSGSDG DDTSWISWFC NLRGNEFFCE VDDDYIQDDF
101: NLCGLSSQVP YFDYALDLIL DVESSHGDMF TEEQNELIES AAEMLYGMIH ARYVLTSKGM AAMLDKYKSY DFGRCPRVYC SGQPCLPVGQ SDIPRSSTVK
201: IYCPRCEDLY YPRSKYQGIC LDIDGAYFGT TFPHLFLMTY GQLKPQKPAQ GYVPRVFGFK VHKP

Best Arabidopsis Sequence Match ( AT2G44680.1 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.