CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77278	Soybean	nucleus	99.65	100.0
KRH57540	Soybean	nucleus	80.42	88.12
KRH04253	Soybean	nucleus	78.67	85.23
TraesCS2D01G242000.2	Wheat	cytosol	74.83	79.55
Zm00001d021557_P001	Maize	cytosol	75.52	79.12
TraesCS2A01G245100.1	Wheat	cytosol	74.83	78.97
KRH57536	Soybean	cytosol	70.63	78.6
KXG36270	Sorghum	cytosol	75.52	78.55
KRH04249	Soybean	nucleus	71.68	78.24
EER91910	Sorghum	cytosol	69.58	75.95
Os07t0495100-01	Rice	cytosol	75.52	75.0
Os10t0564900-01	Rice	cytosol	72.38	74.19
Zm00001d029978_P001	Maize	cytosol	56.99	74.09
TraesCS2D01G388200.1	Wheat	cytosol	70.98	73.29
HORVU2Hr1G092930.1	Barley	cytosol	70.98	73.29
TraesCS2A01G390500.1	Wheat	cytosol	70.98	73.29
TraesCS2B01G408900.1	Wheat	cytosol	70.98	73.29
TraesCSU01G007300.1	Wheat	cytosol	70.28	73.09
TraesCS1B01G229200.1	Wheat	cytosol	70.28	73.09
TraesCS1A01G215700.1	Wheat	cytosol	70.28	73.09
HORVU1Hr1G055250.1	Barley	cytosol	69.93	72.73
OQU82060	Sorghum	cytosol	69.93	71.94
Zm00001d002778_P001	Maize	nucleus	58.74	70.0
Zm00001d006440_P003	Maize	cytosol	73.78	69.87
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	60.84	68.77
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	60.84	68.5
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	51.75	67.89
HORVU4Hr1G090280.3	Barley	cytosol	59.09	62.36
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	47.2	57.69
Zm00001d000052_P004	Maize	cytosol	55.59	55.02

Protein Annotations

Gene3D:1.10.1820.10	EntrezGene:100780095	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	EMBL:ACUP02006741	InterPro:Casein_kin_II_reg-sub_N
InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub	EnsemblPlantsGene:GLYMA_11G039100	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005956	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019887	GO:GO:0030234	GO:GO:0045859	UniProt:I1LGW0	InterPro:IPR016149
EnsemblPlants:KRH28210	ProteinID:KRH28210	ProteinID:KRH28210.1	PFAM:PF01214	PRINTS:PR00472	ScanProsite:PS01101
PANTHER:PTHR11740	PANTHER:PTHR11740:SF15	SMART:SM01085	SUPFAM:SSF57798	UniParc:UPI000233CB6B	SEG:seg

Description

hypothetical protein

Coordinates

chr11:+:2786085..2789533

Molecular Weight (calculated)

31956.0 Da

IEP (calculated)

4.688

GRAVY (calculated)

-0.584

Length

286 amino acids

Sequence
(BLAST)

001: MYRERGGVGS KSEVTSVDRK RINDVLDKQL ERSSPSTSRA AGAINGKDRS SSSLLAAAKD SRSASVTAPI SKNSNASDEE SETDSEESDV SGSDGDDTSW
101: ISWFCNLRGN EFFCEVDDDY IQDDFNLCGL SSQVPYYDYA LDLILDVESS HGDMFTEEQN ELIESAAEML YGLIHARYIL TSKGMAAMLD KYKNYDFGRC
201: PRVYCSGQPC IPVGQSDIPR SSTVKIYCPR CEDIYYPRSK YQGNIDGAYF GTTFPHLFLM TYGQLKPQKP SQSYVPRVFG FKLHKP

Best Arabidopsis Sequence Match ( AT5G47080.1 )
(BLAST)

001: MYRDRGTVNS RPEVVDRKRI NDALERPSPS TSRQVNGKGK GTVTAATTTA NLIGKQQSNN INHRDSRSAS LSKNNTVSDD ESDTDSEESD VSGSDGEDTS
101: WISWFCNLRG NEFFCEVDDD YIQDDFNLCG LSSLVPYYEY ALDLILDVES SQGEMFTEEQ NELIESAAEM LYGLIHARYI LTSKGLAAML DKYKNYDFGR
201: CPRVYCCGQP CLPVGQSDLP RSSTVKIYCP KCEDIYYPRS KYQGNIDGAY FGTTFPHLFL MTYGHLKPAK ATQNYVQRVF GFKLHKP

Arabidopsis Description

CKB1Casein kinase II subunit beta-1 [Source:UniProtKB/Swiss-Prot;Acc:P40228]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.