Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G47080.1 | CDX80051 | AT2G46830.1 | 9724822 |
| AT5G47080.1 | CDX80052 | AT2G46830.1 | 9724822 |
| AT5G47080.1 | CDY41563 | AT2G46830.1 | 9724822 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28980 | Canola | cytosol | 95.65 | 95.31 |
| AT5G47080.1 | Thale cress | cytosol | 88.77 | 85.37 |
| CDX77739 | Canola | cytosol | 76.45 | 84.74 |
| CDX90462 | Canola | cytosol | 78.62 | 76.14 |
| CDY09612 | Canola | cytosol | 77.9 | 75.44 |
| CDY38414 | Canola | cytosol | 75.0 | 72.89 |
| CDX78786 | Canola | cytosol | 72.83 | 71.79 |
| CDY41181 | Canola | cytosol | 68.12 | 71.48 |
| CDX71824 | Canola | cytosol | 67.75 | 71.1 |
| CDY64765 | Canola | cytosol | 68.48 | 70.79 |
| TraesCS2D01G388200.1 | Wheat | cytosol | 71.01 | 70.76 |
| TraesCS2B01G408900.1 | Wheat | cytosol | 71.01 | 70.76 |
| TraesCS2A01G390500.1 | Wheat | cytosol | 71.01 | 70.76 |
| HORVU2Hr1G092930.1 | Barley | cytosol | 71.01 | 70.76 |
| TraesCS2D01G242000.2 | Wheat | cytosol | 67.75 | 69.52 |
| TraesCS2A01G245100.1 | Wheat | cytosol | 67.75 | 69.0 |
| Zm00001d029978_P001 | Maize | cytosol | 54.71 | 68.64 |
| Zm00001d021557_P001 | Maize | cytosol | 67.75 | 68.5 |
| CDX83421 | Canola | cytosol | 68.12 | 68.36 |
| KXG36270 | Sorghum | cytosol | 67.39 | 67.64 |
| CDX95610 | Canola | cytosol | 67.39 | 67.64 |
| OQU82060 | Sorghum | cytosol | 67.39 | 66.91 |
| EER91910 | Sorghum | cytosol | 63.41 | 66.79 |
| Zm00001d002778_P001 | Maize | nucleus | 57.25 | 65.83 |
| TraesCSU01G007300.1 | Wheat | cytosol | 65.58 | 65.82 |
| TraesCS1A01G215700.1 | Wheat | cytosol | 65.58 | 65.82 |
| TraesCS1B01G229200.1 | Wheat | cytosol | 65.58 | 65.82 |
| HORVU1Hr1G055250.1 | Barley | cytosol | 65.22 | 65.45 |
| CDY48249 | Canola | cytosol | 63.04 | 64.93 |
| CDX74677 | Canola | cytosol | 62.68 | 64.79 |
| Os07t0495100-01 | Rice | cytosol | 67.39 | 64.58 |
| Os10t0564900-01 | Rice | cytosol | 65.22 | 64.52 |
| TraesCS4B01G379300.1 | Wheat | cytosol, mitochondrion | 48.91 | 61.93 |
| TraesCSU01G129600.1 | Wheat | cytosol, mitochondrion | 56.16 | 61.26 |
| Zm00001d006440_P003 | Maize | cytosol | 65.94 | 60.26 |
| TraesCS5A01G545600.3 | Wheat | cytosol, mitochondrion | 55.43 | 60.24 |
| CDY64781 | Canola | cytosol | 56.52 | 58.65 |
| CDY48948 | Canola | cytosol | 56.52 | 57.56 |
| HORVU4Hr1G090280.3 | Barley | cytosol | 55.43 | 56.46 |
| Zm00001d000052_P004 | Maize | cytosol | 51.81 | 49.48 |
Protein Annotations
| Gene3D:1.10.1820.10 | MapMan:18.4.3.9.2 | Gene3D:2.20.25.20 | GO:A0A078HRZ6 | UniProt:A0A078HRZ6 | EnsemblPlants:CDY40582 |
| ProteinID:CDY40582 | ProteinID:CDY40582.1 | InterPro:Casein_kin_II_reg-sub_N | InterPro:Casein_kinase_II_beta_like | InterPro:Casein_kinase_II_reg-sub | GO:GO:0003674 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005956 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019887 | GO:GO:0030234 | GO:GO:0045859 |
| EnsemblPlantsGene:GSBRNA2T00069913001 | InterPro:IPR016149 | PFAM:PF01214 | PRINTS:PR00472 | ScanProsite:PS01101 | PANTHER:PTHR11740 |
| PANTHER:PTHR11740:SF15 | SMART:SM01085 | SUPFAM:SSF57798 | UniParc:UPI0004EE0295 | SEG:seg | : |
Description
BnaC02g33100DCasein kinase II subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078HRZ6]
Coordinates
chrLK032474:+:268413..270217
Molecular Weight (calculated)
31182.3 Da
IEP (calculated)
5.860
GRAVY (calculated)
-0.623
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRERGTVGS RPEVADRKRI NQAFERPSST SHQVNGKGKG TVTASAHSVK QPHDHRDSRS ASLSKNNVSD DESDTDSEEE SDVSGSGTSW ISWFCNLRGN
101: EFFCEVDDDY IQDDFNLCGL SSVVPYYEYA LDLILDVESS HGEMFTEEQN ELIESAAEML YGLIHARYIL TTKGLAAMLD KYKNYDFGRC PRVYCCGQPC
201: LPVGQSDLPR SSTVKIYCPK CQDIYYPRSK YQGNIDGAYF GTTFPHLFLM TYGNLKPPKA TQNYVPRVFG FKLHKP
101: EFFCEVDDDY IQDDFNLCGL SSVVPYYEYA LDLILDVESS HGEMFTEEQN ELIESAAEML YGLIHARYIL TTKGLAAMLD KYKNYDFGRC PRVYCCGQPC
201: LPVGQSDLPR SSTVKIYCPK CQDIYYPRSK YQGNIDGAYF GTTFPHLFLM TYGNLKPPKA TQNYVPRVFG FKLHKP
001: MYRDRGTVNS RPEVVDRKRI NDALERPSPS TSRQVNGKGK GTVTAATTTA NLIGKQQSNN INHRDSRSAS LSKNNTVSDD ESDTDSEESD VSGSDGEDTS
101: WISWFCNLRG NEFFCEVDDD YIQDDFNLCG LSSLVPYYEY ALDLILDVES SQGEMFTEEQ NELIESAAEM LYGLIHARYI LTSKGLAAML DKYKNYDFGR
201: CPRVYCCGQP CLPVGQSDLP RSSTVKIYCP KCEDIYYPRS KYQGNIDGAY FGTTFPHLFL MTYGHLKPAK ATQNYVQRVF GFKLHKP
101: WISWFCNLRG NEFFCEVDDD YIQDDFNLCG LSSLVPYYEY ALDLILDVES SQGEMFTEEQ NELIESAAEM LYGLIHARYI LTSKGLAAML DKYKNYDFGR
201: CPRVYCCGQP CLPVGQSDLP RSSTVKIYCP KCEDIYYPRS KYQGNIDGAY FGTTFPHLFL MTYGHLKPAK ATQNYVQRVF GFKLHKP
Arabidopsis Description
CKB1Casein kinase II subunit beta-1 [Source:UniProtKB/Swiss-Prot;Acc:P40228]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.