CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71824
CDX77739
CDX80051	nucleus
CDX80052	nucleus
CDX90462
CDY09612
CDY28980
CDY40582
CDY41181
CDY41563	nucleus
CDY64765
CDY70654
CDY71648

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	CDX80051	AT2G46830.1	14978263
AT2G46830.1	CDX80052	AT2G46830.1	14978263
AT2G46830.1	CDY41563	AT2G46830.1	14978263
AT2G46830.1	CDX80051	AT2G46830.1	22715042
AT2G46830.1	CDX80052	AT2G46830.1	22715042
AT2G46830.1	CDY41563	AT2G46830.1	22715042
AT2G46830.1	CDX80051	AT2G46830.1	22715042
AT2G46830.1	CDX80052	AT2G46830.1	22715042
AT2G46830.1	CDY41563	AT2G46830.1	22715042
AT2G46830.1	CDX71824	AT3G60250.1	10535927
AT2G46830.1	CDY41181	AT3G60250.1	10535927
AT2G46830.1	CDY64765	AT3G60250.1	10535927
AT2G46830.1	CDX71824	AT3G60250.1	14978263
AT2G46830.1	CDY41181	AT3G60250.1	14978263
AT2G46830.1	CDY64765	AT3G60250.1	14978263
AT2G46830.1	CDX71824	AT3G60250.1	9724822
AT2G46830.1	CDY41181	AT3G60250.1	9724822
AT2G46830.1	CDY64765	AT3G60250.1	9724822
AT2G46830.1	CDX90462	AT4G17640.1	9724822
AT2G46830.1	CDY09612	AT4G17640.1	9724822
AT2G46830.1	CDX77739	AT5G47080.1	9724822
AT2G46830.1	CDY28980	AT5G47080.1	9724822
AT2G46830.1	CDY40582	AT5G47080.1	9724822
AT2G46830.1	CDY70654	AT5G67380.1	14978263
AT2G46830.1	CDY71648	AT5G67380.1	14978263
AT2G46830.1	CDY70654	AT5G67380.1	9724822
AT2G46830.1	CDY71648	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80052	Canola	cytosol	28.72	100.0
CDX80051	Canola	nucleus	65.03	88.59
PGSC0003DMT400029394	Potato	nucleus	7.05	77.94
AT2G46830.1	Thale cress	nucleus	55.72	68.91
CDX80750	Canola	nucleus	28.99	38.45
CDY61862	Canola	nucleus	29.52	37.88
CDY64825	Canola	cytosol, nucleus, plastid	7.71	36.94
CDX90004	Canola	nucleus	29.26	36.18
CDY15205	Canola	nucleus	29.39	35.42
VIT_15s0048g02410.t01	Wine grape	nucleus	36.17	35.28
KRH06339	Soybean	nucleus	34.18	34.27
KRH47757	Soybean	nucleus	34.04	34.13
KRH68974	Soybean	nucleus	33.78	33.96
Solyc10g005080.2.1	Tomato	nucleus	32.98	32.55
CDY16939	Canola	nucleus	12.77	32.0
KRG97259	Soybean	nucleus, plastid	34.18	31.38
Os08t0157600-01	Rice	nucleus	28.86	30.18
CDY38566	Canola	nucleus	12.77	29.91
Zm00001d049543_P003	Maize	nucleus	28.19	29.44
HORVU7Hr1G070870.2	Barley	nucleus	28.06	29.43
GSMUA_Achr1P06360_001	Banana	nucleus	28.32	29.34
CDY26997	Canola	nucleus	12.5	29.28
EES13385	Sorghum	nucleus	28.99	29.18
CDY26169	Canola	nucleus	11.97	28.66
CDX90039	Canola	plastid	10.11	28.15
TraesCS7B01G188000.1	Wheat	nucleus	27.39	27.84
TraesCS7A01G299400.3	Wheat	nucleus	27.39	27.61
CDX85462	Canola	nucleus	13.7	27.61
TraesCS7D01G295400.1	Wheat	nucleus	27.26	27.44
CDX69388	Canola	nucleus	13.56	27.27
CDY15171	Canola	nucleus	9.71	27.04
CDY02714	Canola	nucleus	13.16	26.83
CDY19206	Canola	nucleus	12.63	26.24
GSMUA_Achr10P...	Banana	nucleus	21.01	26.16
CDX70747	Canola	nucleus	12.37	25.76
CDY07188	Canola	nucleus	10.11	25.5
CDY52837	Canola	nucleus	10.37	25.49
CDX78737	Canola	nucleus	12.23	25.21
CDY41299	Canola	nucleus	9.31	24.65
CDY56155	Canola	nucleus	10.37	24.15
CDY48515	Canola	nucleus	9.71	23.86
Zm00001d024546_P001	Maize	nucleus	20.88	23.68
CDY41598	Canola	nucleus	9.44	23.59
CDY44719	Canola	nucleus	9.44	23.36
CDY27841	Canola	nucleus	8.78	23.08
CDX80840	Canola	nucleus	8.24	22.96
CDY11228	Canola	nucleus	8.38	22.83
CDX70341	Canola	nucleus	8.64	22.81
CDY51831	Canola	vacuole	10.51	22.7
CDY10419	Canola	nucleus	9.57	13.48

Protein Annotations

KEGG:00190+3.6.1.1	Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.1	Gene3D:3.90.80.10	GO:A0A078HXW3
UniProt:A0A078HXW3	EnsemblPlants:CDY41563	ProteinID:CDY41563	ProteinID:CDY41563.1	GO:GO:0000287	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004427	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006796	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00073198001	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:IPR036649	HAMAP:MF_00209
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFAM:PF00719	ScanProsite:PS00387	PFscan:PS51294
PANTHER:PTHR12802	PANTHER:PTHR12802:SF43	InterPro:Pyrophosphatase	InterPro:Pyrophosphatase_sf	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	SUPFAM:SSF50324	TIGRFAMs:TIGR01557	UniParc:UPI0004EF03F0	SEG:seg	:

Description

BnaC04g00590DBnaC04g00590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXW3]

Coordinates

chrLK032500:+:231928..237612

Molecular Weight (calculated)

83856.8 Da

IEP (calculated)

6.049

GRAVY (calculated)

-0.768

Length

752 amino acids

Sequence
(BLAST)

001: METNSSGEDL VVKTRKPYTI TKQRERWTEE EHNRFLDALR LYGRAWQKIE EHVATKTAVQ IRSHAQKFFS KVEKEAEAKG VPVAQALDIA IPPPRPKRKP
101: NNPYPRKTGT GSLPISKTGL NDGKESLGSA KVSLPETTNE DNCSDCLTHQ HLSAASNAST FREFLPSREQ EQGNNKESNY SDLNIEAGGP HTYPTPIPLL
201: VPLGTRSLSH APTSQPDENS HQSFPEHIMS TLLQTPALYT AASFASTFGG GPQGNLAAMA AATVAAASAW WAANGMLPLC APPFSSGNPP TTYEVNALTK
301: TVDQEHSEAS KARSSLESEE TRNGSKPDCH HHTCAATETD AKGSDGARDR KQVDRSSCGS NTPSSSDDVE ADALVERQEN GGKNDEEVKE VDGDTTNNPQ
401: TSESNARRSR ISSSILADPW KAVSDEGRIA FRALFAREVL PQSFTYQREE GQQQRYPMEL DLNSTADDQE ENRNIAFLGA SKQQLSRGRT GFKPYKRCSM
501: EAKEGRVINN TNPIISVEQK DPKRIRSQHV RHDDQQMSEE TYEETMESNE SPRPAPKLNE RILSTLSKRS VAAHPWHDLE IGPEAPLVFN VVVEITKGSK
601: VKYELDKKTG LIKVDRILYS SVVYPHNYGF IPRTLCEDND PLDVLVLMQE PVLPGCFLRA RAIGLMPMID QGEMDDKIIA VCADDPEYKH FTDIKQLAPH
701: RLSEIRRFFE DYKKNEHKEV AVNDFLPSEK AHEAIQYSMD LYAEYILHSL RR

Best Arabidopsis Sequence Match ( AT2G46830.1 )
(BLAST)

001: METNSSGEDL VIKTRKPYTI TKQRERWTEE EHNRFIEALR LYGRAWQKIE EHVATKTAVQ IRSHAQKFFS KVEKEAEAKG VAMGQALDIA IPPPRPKRKP
101: NNPYPRKTGS GTILMSKTGV NDGKESLGSE KVSHPEMANE DRQQSKPEEK TLQEDNCSDC FTHQYLSAAS SMNKSCIETS NASTFREFLP SREEGSQNNR
201: VRKESNSDLN AKSLENGNEQ GPQTYPMHIP VLVPLGSSIT SSLSHPPSEP DSHPHTVAGD YQSFPNHIMS TLLQTPALYT AATFASSFWP PDSSGGSPVP
301: GNSPPNLAAM AAATVAAASA WWAANGLLPL CAPLSSGGFT SHPPSTFGPS CDVEYTKAST LQHGSVQSRE QEHSEASKAR SSLDSEDVEN KSKPVCHEQP
401: SATPESDAKG SDGAGDRKQV DRSSCGSNTP SSSDDVEADA SERQEDGTNG EVKETNEDTN KPQTSESNAR RSRISSNITD PWKSVSDEGR IAFQALFSRE
501: VLPQSFTYRE EHREEEQQQQ EQRYPMALDL NFTAQLTPVD DQEEKRNTGF LGIGLDASKL MSRGRTGFKP YKRCSMEAKE SRILNNNPII HVEQKDPKRM
601: RLETQAST

Arabidopsis Description

CCA1Protein CCA1 [Source:UniProtKB/Swiss-Prot;Acc:P92973]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.