Factsheet for GSMUA_Achr10P06550_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...	nucleus
GSMUA_Achr10P...
GSMUA_Achr1P06360_001	nucleus
GSMUA_Achr4P17850_001
GSMUA_Achr5P01690_001
GSMUA_Achr6P16850_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	GSMUA_Achr10P...	AT2G46830.1	14978263
AT2G46830.1	GSMUA_Achr1P06360_001	AT2G46830.1	14978263
AT2G46830.1	GSMUA_Achr10P...	AT2G46830.1	22715042
AT2G46830.1	GSMUA_Achr1P06360_001	AT2G46830.1	22715042
AT2G46830.1	GSMUA_Achr10P...	AT2G46830.1	22715042
AT2G46830.1	GSMUA_Achr1P06360_001	AT2G46830.1	22715042
AT2G46830.1	GSMUA_Achr4P17850_001	AT3G60250.1	10535927
AT2G46830.1	GSMUA_Achr4P17850_001	AT3G60250.1	14978263
AT2G46830.1	GSMUA_Achr4P17850_001	AT3G60250.1	9724822
AT2G46830.1	GSMUA_Achr10P...	AT5G67380.1	14978263
AT2G46830.1	GSMUA_Achr5P01690_001	AT5G67380.1	14978263
AT2G46830.1	GSMUA_Achr6P16850_001	AT5G67380.1	14978263
AT2G46830.1	GSMUA_Achr10P...	AT5G67380.1	9724822
AT2G46830.1	GSMUA_Achr5P01690_001	AT5G67380.1	9724822
AT2G46830.1	GSMUA_Achr6P16850_001	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64825	Canola	cytosol, nucleus, plastid	9.77	37.58
GSMUA_Achr1P06360_001	Banana	nucleus	43.87	36.5
GSMUA_AchrUn_...	Banana	nucleus	31.79	31.95
Zm00001d024546_P001	Maize	nucleus	34.77	31.67
KRH68974	Soybean	nucleus	38.08	30.75
KRH06339	Soybean	nucleus	37.09	29.87
Zm00001d049543_P003	Maize	nucleus	35.43	29.72
Os08t0157600-01	Rice	nucleus	34.77	29.21
CDY61862	Canola	nucleus	28.15	29.01
Bra030496.1-P	Field mustard	nucleus	28.15	29.01
CDX80051	Canola	nucleus	26.32	28.8
KRH47757	Soybean	nucleus	35.76	28.8
EES13385	Sorghum	nucleus	35.6	28.78
CDX80750	Canola	nucleus	26.99	28.75
VIT_15s0048g02410.t01	Wine grape	nucleus	36.26	28.4
HORVU7Hr1G070870.2	Barley	nucleus	33.61	28.31
Bra033291.1-P	Field mustard	nucleus	27.98	27.84
KRG97259	Soybean	nucleus, plastid	37.75	27.84
CDX90004	Canola	nucleus	27.98	27.8
AT1G01060.7	Thale cress	nucleus	29.47	27.6
CDY15205	Canola	nucleus	28.48	27.56
AT2G46830.1	Thale cress	nucleus	27.48	27.3
TraesCS7A01G299400.3	Wheat	nucleus	33.11	26.81
Solyc10g005080.2.1	Tomato	nucleus	33.77	26.77
TraesCS7B01G188000.1	Wheat	nucleus	32.78	26.76
TraesCS7D01G295400.1	Wheat	nucleus	32.95	26.64
CDY41563	Canola	nucleus	26.16	21.01
GSMUA_Achr8P13440_001	Banana	nucleus	11.92	19.0
GSMUA_AchrUn_...	Banana	nucleus	13.41	17.34
GSMUA_Achr11P...	Banana	nucleus	11.76	14.85
GSMUA_Achr10P...	Banana	nucleus	1.82	13.1
GSMUA_Achr5P10280_001	Banana	nucleus	5.79	12.87
GSMUA_Achr7P04620_001	Banana	nucleus	5.63	12.73
GSMUA_Achr7P17560_001	Banana	nucleus	5.96	12.0
GSMUA_Achr1P15370_001	Banana	mitochondrion	2.32	11.48
GSMUA_Achr3P17770_001	Banana	nucleus	4.3	10.88
GSMUA_Achr1P03720_001	Banana	nucleus	5.46	9.59
GSMUA_Achr1P06480_001	Banana	plastid	6.13	8.6
CDX80052	Canola	cytosol	0.33	0.93

Protein Annotations

EnsemblPlants:GSMUA_Achr10P06550_001	EnsemblPlants:GSMUA_Achr10T06550_001	EnsemblPlantsGene:GSMUA_Achr10G06550_001	PANTHER:PTHR12802	PANTHER:PTHR12802:SF43	SEG:seg
UniParc:UPI0002962115	UniProt:M0RFY2	MapMan:27.1.1	:	:	:

Description

Putative Protein LHY [Source:GMGC_GENE;Acc:GSMUA_Achr10G06550_001]

Coordinates

chr10:-:16879585..16882126

Molecular Weight (calculated)

65721.3 Da

IEP (calculated)

6.208

GRAVY (calculated)

-0.491

Length

604 amino acids

Sequence
(BLAST)

001: MHLMLGFYHE SDSEVNFMTN TIIECFKLQL EKEALEKGIP PGQAHDIDIP PPRPKRKPSS PYPRKSTGGS LAPSGEAIYG KQVQSMSLLG MNKVMGIGGD
101: ALQEKYTAMQ KLQSKEISED AGSSEVLSVC QDDLSASFSS ANNSSSNHGK YMEFLPTREK IDGKIAINKY SAPHEVDQEL DRSSKFFVDH EMEGVNLTLE
201: EGASTSKNTV EGNQTHLKNP PLHIVDRDGE KSMQTEDSDG QNCSAVTGQV GGHANANPSM NPVISAMPFQ NIPTIGSMHH PFPALSAFTH FHSSQDAYRS
301: SLNISSTFPS LIVSTLLQNP AVHAAASLAA SFWPAAGLET SLQSAPEIFA GEVPEQQMHP TPSLEAIAAA TVAAAAAWWA CQGLLPWFPP LPGFAFSPPT
401: TAAVPSVDIA RVQEAHATGS DKFKPLALSG LQDLEKAMNN KKQDRSSCGS NTPSGIYFSN FSACETNHRR LRSSGSMNES WKEVSEEGRL AFQALFKREV
501: LPQSFSPPQT EAAATVMNKE ETTKLPIDFN KNVQHPTDLN HLQDDAKEEM CMRSNDSIIQ GKLKIRRTGF KPYKRCSVEA RENRAAAVEE AGSKRIRLQG
601: EALT

Best Arabidopsis Sequence Match ( AT1G01060.5 )
(BLAST)

001: MEELGNELKN ILGQRLLFRS EVMHKSSSQS HPYGNQTSLP YRTGHEVTLS SLPRKIRFGK AHSFWFTFQL EKEAEVKGIP VCQALDIEIP PPRPKRKPNT
101: PYPRKPGNNG TSSSQVSSAK DAKLVSSASS SQLNQAFLDL EKMPFSEKTS TGKENQDENC SGVSTVNKYP LPTKQVSGDI ETSKTSTVDN AVQDVPKKNK
201: DKDGNDGTTV HSMQNYPWHF HADIVNGNIA KCPQNHPSGM VSQDFMFHPM REETHGHANL QATTASATTT ASHQAFPACH SQDDYRSFLQ ISSTFSNLIM
301: STLLQNPAAH AAATFAASVW PYASVGNSGD SSTPMSSSPP SITAIAAATV AAATAWWASH GLLPVCAPAP ITCVPFSTVA VPTPAMTEMD TVENTQPFEK
401: QNTALQDQNL ASKSPASSSD DSDETGVTKL NADSKTNDDK IEEVVVTAAV HDSNTAQKKN LVDRSSCGSN TPSGSDAETD ALDKMEKDKE DVKETDENQP
501: DVIELNNRKI KMRDNNSNNN ATTDSWKEVS EEGRIAFQAL FARERLPQSF SPPQVAENVN RKQSDTSMPL APNFKSQDSC AADQEGVVMI GVGTCKSLKT
601: RQTGFKPYKR CSMEVKESQV GNINNQSDEK VCKRLRLEGE AST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.