Factsheet for GSMUA_Achr10P06560_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P04620_001	Banana	nucleus	52.38	16.48
GSMUA_Achr5P10280_001	Banana	nucleus	48.81	15.07
GSMUA_Achr8P13440_001	Banana	nucleus	65.48	14.51
GSMUA_Achr7P17560_001	Banana	nucleus	51.19	14.33
GSMUA_AchrUn_...	Banana	nucleus	66.67	11.99
GSMUA_Achr1P03720_001	Banana	nucleus	48.81	11.92
GSMUA_Achr11P...	Banana	nucleus	66.67	11.72
GSMUA_AchrUn_...	Banana	nucleus	77.38	10.82
GSMUA_Achr1P06480_001	Banana	plastid	53.57	10.47
GSMUA_Achr3P17770_001	Banana	nucleus	27.38	9.62
GSMUA_Achr1P06360_001	Banana	nucleus	82.14	9.5
GSMUA_Achr1P15370_001	Banana	mitochondrion	7.14	4.92
GSMUA_Achr10P...	Banana	nucleus	13.1	1.82

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr10G06560_001
EnsemblPlants:GSMUA_Achr10P06560_001	EnsemblPlants:GSMUA_Achr10T06560_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0RFY3	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF43	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000294A18F	:	:

Description

Protein CCA1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G06560_001]

Coordinates

chr10:-:16898862..16900422

Molecular Weight (calculated)

9925.8 Da

IEP (calculated)

9.717

GRAVY (calculated)

-0.655

Length

84 amino acids

Sequence
(BLAST)

1: MEGNSSGEDV VVVKTRKPYT ITKQRERWTE EEHNRFLEAL KLYGRAWQRI EEHIGTKTAV QIRSHAQKFF TKVSCFSSFV EIHI

Best Arabidopsis Sequence Match ( AT2G46830.1 )
(BLAST)

001: METNSSGEDL VIKTRKPYTI TKQRERWTEE EHNRFIEALR LYGRAWQKIE EHVATKTAVQ IRSHAQKFFS KVEKEAEAKG VAMGQALDIA IPPPRPKRKP
101: NNPYPRKTGS GTILMSKTGV NDGKESLGSE KVSHPEMANE DRQQSKPEEK TLQEDNCSDC FTHQYLSAAS SMNKSCIETS NASTFREFLP SREEGSQNNR
201: VRKESNSDLN AKSLENGNEQ GPQTYPMHIP VLVPLGSSIT SSLSHPPSEP DSHPHTVAGD YQSFPNHIMS TLLQTPALYT AATFASSFWP PDSSGGSPVP
301: GNSPPNLAAM AAATVAAASA WWAANGLLPL CAPLSSGGFT SHPPSTFGPS CDVEYTKAST LQHGSVQSRE QEHSEASKAR SSLDSEDVEN KSKPVCHEQP
401: SATPESDAKG SDGAGDRKQV DRSSCGSNTP SSSDDVEADA SERQEDGTNG EVKETNEDTN KPQTSESNAR RSRISSNITD PWKSVSDEGR IAFQALFSRE
501: VLPQSFTYRE EHREEEQQQQ EQRYPMALDL NFTAQLTPVD DQEEKRNTGF LGIGLDASKL MSRGRTGFKP YKRCSMEAKE SRILNNNPII HVEQKDPKRM
601: RLETQAST

Arabidopsis Description

CCA1Protein CCA1 [Source:UniProtKB/Swiss-Prot;Acc:P92973]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.