Factsheet for GSMUA_Achr1P03720_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P10280_001	Banana	nucleus	50.87	64.34
KXG31009	Sorghum	nucleus	47.09	57.65
Zm00001d017609_P011	Maize	nucleus	45.35	57.14
Os02t0680700-01	Rice	nucleus	47.67	56.36
HORVU6Hr1G066000.1	Barley	nucleus	46.22	56.18
TraesCS6D01G239800.1	Wheat	nucleus	46.51	55.94
TraesCS6B01G266800.3	Wheat	nucleus	46.51	55.94
GSMUA_Achr7P04620_001	Banana	nucleus	42.73	55.06
GSMUA_Achr7P17560_001	Banana	nucleus	45.06	51.67
KRH08856	Soybean	nucleus	43.6	49.83
Solyc06g036300.2.1	Tomato	nucleus, plastid	43.02	49.17
KRH35235	Soybean	nucleus	44.48	49.04
GSMUA_Achr10P...	Banana	nucleus	11.92	48.81
HORVU0Hr1G031850.1	Barley	nucleus, plastid	46.22	47.75
TraesCS6A01G258600.2	Wheat	nucleus	47.09	47.37
Bra003117.1-P	Field mustard	nucleus	41.86	47.06
CDY52837	Canola	nucleus	41.86	47.06
Bra029111.1-P	Field mustard	nucleus	43.02	46.25
CDY56155	Canola	nucleus	43.02	45.82
PGSC0003DMT400074344	Potato	plastid	38.37	45.67
KRG91589	Soybean	nucleus	43.6	45.59
VIT_16s0050g01180.t01	Wine grape	nucleus	44.19	45.1
AT5G52660.2	Thale cress	nucleus	43.02	44.71
CDY27841	Canola	nucleus	36.05	43.36
CDY51831	Canola	vacuole	42.73	42.24
KRH38371	Soybean	nucleus	43.02	41.93
GSMUA_Achr1P06480_001	Banana	plastid	45.06	36.05
GSMUA_Achr3P17770_001	Banana	nucleus	24.42	35.15
GSMUA_Achr1P15370_001	Banana	mitochondrion	11.63	32.79
GSMUA_Achr8P13440_001	Banana	nucleus	19.19	17.41
GSMUA_Achr11P...	Banana	nucleus	19.77	14.23
GSMUA_AchrUn_...	Banana	nucleus	18.9	13.92
GSMUA_AchrUn_...	Banana	nucleus	21.22	12.15
GSMUA_Achr1P06360_001	Banana	nucleus	20.64	9.78
GSMUA_Achr10P...	Banana	nucleus	9.59	5.46

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSMUA_Achr1G03720_001	EnsemblPlants:GSMUA_Achr1P03720_001	EnsemblPlants:GSMUA_Achr1T03720_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0RWT0
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF83
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002961316	SEG:seg

Description

myb-like DNA-binding domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G03720_001]

Coordinates

chr1:+:3068443..3076497

Molecular Weight (calculated)

38954.1 Da

IEP (calculated)

9.825

GRAVY (calculated)

-0.543

Length

344 amino acids

Sequence
(BLAST)

001: MSSEDAAKKV RKPYTVTKSR ESWTEQEHDK FIEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK NGTGAHVPPP RPKRKAAHPY PQKASKNVPL
101: LVHPSTLQAS FLLEQGYGHG ADSSTKSRNS FAGANYQYAD NKRSRGAIVV DNCHSNSTKS PRGSQPNYED NDKANQISSH NGKNIMVPIP DIRRYSANIF
201: VSENCSLISH DLVPVNMKQS AQGRYCRTWN FSSNQYVLTS NPPKDHFMPD FVQIYNFLGS VFDPSTSCHL QKLKEMDPLD VQTVLLLMRN LSINLTNPDF
301: EDHVNLFSMT SFSVFRKLDL FISVHTSVTA MHIWSISFLL GNPA

Best Arabidopsis Sequence Match ( AT3G09600.4 )
(BLAST)

001: MSSSPSRNPT NAEAPPPPPT STDAVAEGSS KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED FVGSKTVIQI RSHAQKYFLK VQKNGTLAHV
101: PPPRPKRKAA HPYPQKASKN AQMPLQVSTS FTTTRNGDMP GYASWDDASM LLNRVISPQH ELATLRGAEA DIGSKGLLNV SSPSTSGMGS SSRTVSGSEI
201: VRKAKQPPVL HGVPDFAEVY NFIGSVFDPE TRGHVEKLKE MDPINFETVL LLMRNLTVNL SNPDLESTVS VKFAIKDL

Arabidopsis Description

RVE8Protein REVEILLE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.