Factsheet for VIT_16s0050g01180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08856	Soybean	nucleus	63.5	71.1
KRH35235	Soybean	nucleus	62.02	66.99
Solyc06g036300.2.1	Tomato	nucleus, plastid	57.86	64.78
KRG91589	Soybean	nucleus	62.61	64.13
VIT_15s0046g02260.t01	Wine grape	nucleus	62.02	63.72
HORVU6Hr1G066000.1	Barley	nucleus	53.41	63.6
KXG31009	Sorghum	nucleus	52.82	63.35
GSMUA_Achr5P10280_001	Banana	nucleus	51.04	63.24
Os02t0680700-01	Rice	nucleus	54.6	63.23
TraesCS6B01G266800.3	Wheat	nucleus	53.41	62.94
TraesCS6D01G239800.1	Wheat	nucleus	53.41	62.94
Bra029111.1-P	Field mustard	nucleus	59.64	62.81
Zm00001d017609_P011	Maize	nucleus	50.45	62.27
CDY56155	Canola	nucleus	59.64	62.23
CDY52837	Canola	nucleus	55.79	61.44
AT5G52660.2	Thale cress	nucleus	60.24	61.33
Bra003117.1-P	Field mustard	nucleus	55.49	61.11
GSMUA_Achr7P17560_001	Banana	nucleus	54.01	60.67
PGSC0003DMT400074344	Potato	plastid	51.93	60.55
KRH38371	Soybean	nucleus	62.91	60.06
CDY27841	Canola	nucleus	49.85	58.74
CDY51831	Canola	vacuole	60.24	58.33
Os06t0669700-01	Rice	nucleus	40.95	55.87
HORVU0Hr1G031850.1	Barley	nucleus, plastid	53.41	54.05
VIT_08s0040g03220.t01	Wine grape	nucleus	44.81	53.36
TraesCS6A01G258600.2	Wheat	nucleus	53.71	52.92
Os06t0105800-02	Rice	nucleus	46.59	52.68
HORVU7Hr1G001830.3	Barley	nucleus	42.14	52.4
TraesCS7D01G014900.2	Wheat	nucleus	43.03	51.24
KXG20579	Sorghum	nucleus	51.34	51.03
TraesCS7A01G017600.1	Wheat	nucleus	41.84	50.72
TraesCS7D01G458000.1	Wheat	nucleus	50.74	50.15
TraesCS7B01G372500.1	Wheat	nucleus	50.45	49.85
TraesCS7A01G470700.1	Wheat	nucleus	50.15	49.71
EER89043	Sorghum	nucleus	46.29	49.21
Zm00001d046974_P002	Maize	nucleus	47.48	47.48
TraesCS4A01G474100.2	Wheat	nucleus	43.03	46.93
GSMUA_Achr1P06480_001	Banana	plastid	58.75	46.05
Zm00001d036632_P002	Maize	nucleus	48.96	45.96
Zm00001d045581_P002	Maize	nucleus	42.73	45.57
GSMUA_Achr1P03720_001	Banana	nucleus	45.1	44.19
HORVU7Hr1G107550.3	Barley	nucleus	50.45	40.19
GSMUA_Achr1P15370_001	Banana	mitochondrion	13.35	36.89
VIT_04s0079g00410.t01	Wine grape	nucleus	28.19	19.83
VIT_15s0048g02410.t01	Wine grape	nucleus	25.22	11.02

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100252586	wikigene:100252586	MapMan:15.5.2.2	MapMan:27.1.6.2	ProteinID:CCB47831
ProteinID:CCB47831.1	UniProt:F6H6C0	EMBL:FN595243	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100252586	wikigene:LOC100252586	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF83	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGR:TC70894	TIGRFAMs:TIGR01557	UniParc:UPI000210A994	ArrayExpress:VIT_16s0050g01180	EnsemblPlantsGene:VIT_16s0050g01180
EnsemblPlants:VIT_16s0050g01180.t01	RefSeq:XP_002273319	RefSeq:XP_002273319.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr16:-:18073821..18081832

Molecular Weight (calculated)

37046.7 Da

IEP (calculated)

9.456

GRAVY (calculated)

-0.574

Length

337 amino acids

Sequence
(BLAST)

001: MVSVIPSPSS EAFYFDPASM ALPGLGPFAT TAAAAAAATT SSLEDPAKKI RKPYTITKCR EKWTEPEHDK FLEALQLFDR DWKKIEAFVG SKTVIQIRSH
101: AQKYFLKVQK NGINEHLPPP RPKRKAAHPY PHKASKNAPV LSQGTGSFHS SAALRETGYV LRPDSSSILR NPITSAAASS WTNSKPAQTV GLSHVAKGDM
201: RSAGPTVPNN CCSSAESTPR GRTTVEASEQ GNHVHTLRVL PDFVQVYRFI GSVFDPNSTG HLQKLKKMDP IDVETVLLLM RNLSINLTSP DFEDHRKLLS
301: TYEIDSETTS HGVESNKIPQ DDQTKDRAQL GTKDKDE

Best Arabidopsis Sequence Match ( AT5G52660.2 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.