Factsheet for VIT_15s0046g02260.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06589	Soybean	nucleus	69.21	68.37
GSMUA_Achr7P04620_001	Banana	nucleus	53.66	65.92
KRH48063	Soybean	nucleus	66.46	65.86
VIT_16s0050g01180.t01	Wine grape	nucleus	63.72	62.02
CDX90039	Canola	plastid	50.0	60.74
Bra033257.1-P	Field mustard	plastid	50.0	60.74
CDY15171	Canola	nucleus	49.39	60.0
AT4G01280.2	Thale cress	nucleus	53.66	58.09
CDY07188	Canola	nucleus	50.91	56.04
PGSC0003DMT400000546	Potato	nucleus	54.27	55.97
Solyc01g095030.2.1	Tomato	nucleus	55.79	55.29
AT1G01520.3	Thale cress	plastid	47.87	54.7
CDY48515	Canola	nucleus	50.91	54.58
VIT_08s0040g03220.t01	Wine grape	nucleus	46.95	54.42
Bra037365.1-P	Field mustard	nucleus	50.3	48.67
VIT_04s0079g00410.t01	Wine grape	nucleus	27.74	19.0
VIT_15s0048g02410.t01	Wine grape	nucleus	25.61	10.89

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100855334	wikigene:100855334	MapMan:15.5.2.2	MapMan:27.1.6.2	ProteinID:CBI40399
ProteinID:CBI40399.3	UniProt:D7UCD4	EMBL:FN596755	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100855334	wikigene:LOC100855334	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF83	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00015CAC11	ArrayExpress:VIT_15s0046g02260	EnsemblPlantsGene:VIT_15s0046g02260	EnsemblPlants:VIT_15s0046g02260.t01
unigene:Vvi.12669	unigene:Vvi.22687	RefSeq:XP_003633954	RefSeq:XP_003633954.1	RefSeq:XP_010661807.1	SEG:seg

Description

No Description!

Coordinates

chr15:+:19038937..19043639

Molecular Weight (calculated)

36324.1 Da

IEP (calculated)

9.638

GRAVY (calculated)

-0.540

Length

328 amino acids

Sequence
(BLAST)

001: MVSVNPNPPQ GFYLDPMQMG LPALGSLQPT TASVAASSSS EDPNKKIRKP YTITKSRESW TEQEHDKFLE ALQLFDRDWK KIEAFVGSKT VIQIRSHAQK
101: YFLKVQKNGT SEHVPPPRPK RKAAHPYPQK ASKNAPVFPQ DTMAFQTSAT LLEPGFVLRP DSSSVLRNPM NNAALSSWTY NSQPPVSVSH VTKDEVGLAG
201: PAMQHNNCCS SSNESTPRSW PICKTHDQGN QSLPIRVMPD FAQVYSFIGS VFDPNGSGHL QKLKNMDPIN METVLLLMRN LTINLTSPEF ADHRKLLSSY
301: DADFEKAKSS STRSILHVGK SESAILSA

Best Arabidopsis Sequence Match ( AT5G52660.2 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.