Factsheet for Solyc01g095030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000546	Potato	nucleus	90.63	94.34
GSMUA_Achr7P04620_001	Banana	nucleus	46.22	57.3
VIT_15s0046g02260.t01	Wine grape	nucleus	55.29	55.79
Solyc06g036300.2.1	Tomato	nucleus, plastid	49.85	54.82
KRH48063	Soybean	nucleus	54.08	54.08
Bra033257.1-P	Field mustard	plastid	44.11	54.07
CDX90039	Canola	plastid	44.11	54.07
KRH06589	Soybean	nucleus	54.08	53.92
CDY15171	Canola	nucleus	43.5	53.33
AT1G01520.3	Thale cress	plastid	44.41	51.22
AT4G01280.2	Thale cress	nucleus	45.02	49.17
CDY07188	Canola	nucleus	43.81	48.66
Solyc10g084370.1.1	Tomato	nucleus	43.2	48.31
CDY48515	Canola	nucleus	43.2	46.73
Bra037365.1-P	Field mustard	nucleus	42.9	41.89
Solyc03g098320.2.1	Tomato	nucleus	24.17	17.47
Solyc02g036370.2.1	Tomato	nucleus	24.47	17.46
Solyc10g005080.2.1	Tomato	nucleus	23.57	10.24

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K4AZP3	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF83	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
EnsemblPlantsGene:Solyc01g095030.2	EnsemblPlants:Solyc01g095030.2.1	TIGRFAMs:TIGR01557	UniParc:UPI0002768D57	:	:

Description

No Description!

Coordinates

chr1:-:86401425..86409205

Molecular Weight (calculated)

37041.0 Da

IEP (calculated)

9.961

GRAVY (calculated)

-0.716

Length

331 amino acids

Sequence
(BLAST)

001: MVSVYPTPPG QDFHYMGDPM KTGLMGLHPV QSGTSIHGNL NLDSNTGLVV SDDHSKKTRK PYTITKSRES WTEQEHDKFL EALQLFDRDW KKIEAFVGSK
101: TVIQIRSHAQ KYFLKVQKSG TSEHVPPPRP KRKASHPYPQ KAPKKVISQV GSIQFQPPGA LPVPGFGIGP DPLSVPGNTI NFSPWTYDNV PAISTIQTRK
201: DDAQLSSGGV KQNCSSSSNE NNPRINKTKE SNDQNESQKQ MKVMPDFAQV YSFIGSVFDP STRDHLQRLK KMDPIDIQTA LMLMKNLSFN LSSPEFEDHR
301: RMLSSYGLGA EKDKMDLPIK SDFRGNAIRA I

Best Arabidopsis Sequence Match ( AT5G52660.2 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.