Factsheet for Solyc10g005080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g088740.2.1
Solyc02g092640.2.1
Solyc03g044140.2.1
Solyc05g050680.2.1
Solyc10g005080.2.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	Solyc10g005080.2.1	AT2G46830.1	14978263
AT2G46830.1	Solyc10g005080.2.1	AT2G46830.1	22715042
AT2G46830.1	Solyc10g005080.2.1	AT2G46830.1	22715042
AT2G46830.1	Solyc01g088740.2.1	AT3G60250.1	10535927
AT2G46830.1	Solyc05g050680.2.1	AT3G60250.1	10535927
AT2G46830.1	Solyc01g088740.2.1	AT3G60250.1	14978263
AT2G46830.1	Solyc05g050680.2.1	AT3G60250.1	14978263
AT2G46830.1	Solyc01g088740.2.1	AT3G60250.1	9724822
AT2G46830.1	Solyc05g050680.2.1	AT3G60250.1	9724822
AT2G46830.1	Solyc02g092640.2.1	AT5G67380.1	14978263
AT2G46830.1	Solyc03g044140.2.1	AT5G67380.1	14978263
AT2G46830.1	Solyc02g092640.2.1	AT5G67380.1	9724822
AT2G46830.1	Solyc03g044140.2.1	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029394	Potato	nucleus	7.61	85.29
VIT_15s0048g02410.t01	Wine grape	nucleus	57.48	56.81
KRH06339	Soybean	nucleus	52.23	53.07
KRH47757	Soybean	nucleus	51.71	52.53
KRH68974	Soybean	nucleus	51.05	52.01
AT1G01060.7	Thale cress	nucleus	41.21	48.68
CDX80750	Canola	nucleus	36.22	48.68
CDY61862	Canola	nucleus	37.4	48.63
Bra030496.1-P	Field mustard	nucleus	37.27	48.46
CDX90004	Canola	nucleus	37.93	47.53
CDY15205	Canola	nucleus	38.85	47.44
Bra033291.1-P	Field mustard	nucleus	37.66	47.28
KRG97259	Soybean	nucleus, plastid	50.26	46.76
CDY64825	Canola	cytosol, nucleus, plastid	9.58	46.5
CDX80051	Canola	nucleus	33.46	46.2
AT2G46830.1	Thale cress	nucleus	34.38	43.09
GSMUA_Achr1P06360_001	Banana	nucleus	37.8	39.67
Os08t0157600-01	Rice	nucleus	36.09	38.25
EES13385	Sorghum	nucleus	37.14	37.88
Zm00001d049543_P003	Maize	nucleus	35.43	37.5
HORVU7Hr1G070870.2	Barley	nucleus	34.51	36.68
TraesCS7B01G188000.1	Wheat	nucleus	33.6	34.59
TraesCS7A01G299400.3	Wheat	nucleus	33.73	34.45
TraesCS7D01G295400.1	Wheat	nucleus	33.73	34.4
GSMUA_Achr10P...	Banana	nucleus	26.77	33.77
CDY41563	Canola	nucleus	32.55	32.98
Zm00001d024546_P001	Maize	nucleus	28.22	32.43
Solyc02g036370.2.1	Tomato	nucleus	17.32	28.45
Solyc03g098320.2.1	Tomato	nucleus	16.01	26.64
Solyc10g084370.1.1	Tomato	nucleus	9.97	25.68
Solyc06g036300.2.1	Tomato	nucleus, plastid	9.45	23.92
Solyc01g095030.2.1	Tomato	nucleus	10.24	23.57
CDX80052	Canola	cytosol	0.39	1.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K4CX41	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF43	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
EnsemblPlantsGene:Solyc10g005080.2	EnsemblPlants:Solyc10g005080.2.1	TIGRFAMs:TIGR01557	UniParc:UPI00018C991E	SEG:seg	:

Description

No Description!

Coordinates

chr10:+:59310..79441

Molecular Weight (calculated)

83712.2 Da

IEP (calculated)

6.400

GRAVY (calculated)

-0.751

Length

762 amino acids

Sequence
(BLAST)

001: MDPYSSGEEL VVKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEALTKG VPTSQALDIE IPPPRPKRKP
101: SNPYPRKTSA AGHSSQVGAK DGKYSTTFSS ICEERNLFDL EKEPITEKPG GNEKLGNVKE TQNKKNCSQG LTKEGASAAS MSSGKSLQAH VAPTDVCAFS
201: ESVSVTKGVV NNDNANKSFL IVESKEHQQS EILDIRQSFQ GNSSCNTFDG GKSCQSSEKL AQGEKKHPSF QPNHLGEFSR NDMQVLHNYP RHVPVHILDG
301: TNGSQIAPDM FNHESTSQQI NGVPGLPNLY SNPASSTTSE HHSNAPQSSI HQSFSCFHPI FTPIRDPDDY RSFFQLSSTF SSLIVSALLQ NPAAHVAASF
401: AASFWPYANM ERPTDSPTDN TASQINSAPS MAAIAAATVA AATAWWAAHG LLPLCSQFQS SFTCVPTSAT SMQVDACQPR VDKNEGREGT HDSPHVQEPV
501: PECSEALQEQ QSGSKLPPSL SSESEESEGR KLKTGLTATD TEQGAAVTKI NEPNAEKGGK QVDRSSCGSN TPSSSEIETD ALEKDEKGKE EPQESNINLL
601: AGEAANRRYR NFISPTESWK EVSEEGRIAF QALFTREVLP QSFSPSLDLK NKGKIILEKL KQKPDEKVQC GPQLDLNDMA SNICSSHQTM EDNVLLIGNK
701: EDVETCLPMI ELGQVRLKAR RTGFKPYKRC SLEANDSRVT SSNCQDEEKS SKRLRLEGEA ST

Best Arabidopsis Sequence Match ( AT2G46830.1 )
(BLAST)

001: METNSSGEDL VIKTRKPYTI TKQRERWTEE EHNRFIEALR LYGRAWQKIE EHVATKTAVQ IRSHAQKFFS KVEKEAEAKG VAMGQALDIA IPPPRPKRKP
101: NNPYPRKTGS GTILMSKTGV NDGKESLGSE KVSHPEMANE DRQQSKPEEK TLQEDNCSDC FTHQYLSAAS SMNKSCIETS NASTFREFLP SREEGSQNNR
201: VRKESNSDLN AKSLENGNEQ GPQTYPMHIP VLVPLGSSIT SSLSHPPSEP DSHPHTVAGD YQSFPNHIMS TLLQTPALYT AATFASSFWP PDSSGGSPVP
301: GNSPPNLAAM AAATVAAASA WWAANGLLPL CAPLSSGGFT SHPPSTFGPS CDVEYTKAST LQHGSVQSRE QEHSEASKAR SSLDSEDVEN KSKPVCHEQP
401: SATPESDAKG SDGAGDRKQV DRSSCGSNTP SSSDDVEADA SERQEDGTNG EVKETNEDTN KPQTSESNAR RSRISSNITD PWKSVSDEGR IAFQALFSRE
501: VLPQSFTYRE EHREEEQQQQ EQRYPMALDL NFTAQLTPVD DQEEKRNTGF LGIGLDASKL MSRGRTGFKP YKRCSMEAKE SRILNNNPII HVEQKDPKRM
601: RLETQAST

Arabidopsis Description

CCA1Protein CCA1 [Source:UniProtKB/Swiss-Prot;Acc:P92973]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.