Factsheet for PGSC0003DMT400029394

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004353
PGSC0003DMT400018024
PGSC0003DMT400029394	nucleus
PGSC0003DMT400064191

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	PGSC0003DMT400029394	AT2G46830.1	14978263
AT2G46830.1	PGSC0003DMT400029394	AT2G46830.1	22715042
AT2G46830.1	PGSC0003DMT400029394	AT2G46830.1	22715042
AT2G46830.1	PGSC0003DMT400004353	AT3G60250.1	10535927
AT2G46830.1	PGSC0003DMT400018024	AT3G60250.1	10535927
AT2G46830.1	PGSC0003DMT400004353	AT3G60250.1	14978263
AT2G46830.1	PGSC0003DMT400018024	AT3G60250.1	14978263
AT2G46830.1	PGSC0003DMT400004353	AT3G60250.1	9724822
AT2G46830.1	PGSC0003DMT400018024	AT3G60250.1	9724822
AT2G46830.1	PGSC0003DMT400064191	AT5G67380.1	14978263
AT2G46830.1	PGSC0003DMT400064191	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028711	Potato	nucleus	58.82	13.99
PGSC0003DMT400074344	Potato	plastid	57.35	13.49
PGSC0003DMT400000546	Potato	nucleus	57.35	12.26
PGSC0003DMT400065850	Potato	nucleus	72.06	10.52
PGSC0003DMT400055263	Potato	nucleus	73.53	10.5
CDX80051	Canola	nucleus	79.41	9.78
GSMUA_AchrUn_...	Banana	nucleus	82.35	9.32
CDX80750	Canola	nucleus	76.47	9.17
CDY61862	Canola	nucleus	77.94	9.04
Bra033291.1-P	Field mustard	nucleus	79.41	8.9
CDX90004	Canola	nucleus	79.41	8.88
Bra030496.1-P	Field mustard	nucleus	76.47	8.87
AT2G46830.1	Thale cress	nucleus	77.94	8.72
CDY15205	Canola	nucleus	79.41	8.65
AT1G01060.7	Thale cress	nucleus	79.41	8.37
KRH68974	Soybean	nucleus	85.29	7.75
Os08t0157600-01	Rice	nucleus	80.88	7.65
Solyc10g005080.2.1	Tomato	nucleus	85.29	7.61
KRH06339	Soybean	nucleus	83.82	7.6
KRH47757	Soybean	nucleus	83.82	7.6
HORVU7Hr1G070870.2	Barley	nucleus	79.41	7.53
Zm00001d049543_P003	Maize	nucleus	79.41	7.5
VIT_15s0048g02410.t01	Wine grape	nucleus	83.82	7.39
EES13385	Sorghum	nucleus	80.88	7.36
TraesCS7B01G188000.1	Wheat	nucleus	79.41	7.3
TraesCS7A01G299400.3	Wheat	nucleus	79.41	7.24
TraesCS7D01G295400.1	Wheat	nucleus	79.41	7.23
KRG97259	Soybean	nucleus, plastid	85.29	7.08
CDY41563	Canola	nucleus	77.94	7.05
Zm00001d024546_P001	Maize	nucleus	5.88	0.6
CDY64825	Canola	cytosol, nucleus, plastid	0.0	0.0
CDX80052	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M1ASR4	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400011294
PGSC:PGSC0003DMG400011294	EnsemblPlants:PGSC0003DMT400029394	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF43	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000295D4EF	:	:

Description

MYB transcription factor MYB114 [Source:PGSC_GENE;Acc:PGSC0003DMG400011294]

Coordinates

chr10:+:147113..148195

Molecular Weight (calculated)

8381.2 Da

IEP (calculated)

10.873

GRAVY (calculated)

-0.759

Length

68 amino acids

Sequence
(BLAST)

1: MRFLLTRKPY TITKQRERWT EEEHNRFLEA LKLYGRAWQR IEEHIGTKTA VQIRSHAQKF FTKVISYL

Best Arabidopsis Sequence Match ( AT1G01060.4 )
(BLAST)

001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.