Factsheet for PGSC0003DMT400000546

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g095030.2.1	Tomato	nucleus	94.34	90.63
GSMUA_Achr7P04620_001	Banana	nucleus	48.43	57.68
PGSC0003DMT400029394	Potato	nucleus	12.26	57.35
Bra033257.1-P	Field mustard	plastid	46.23	54.44
CDX90039	Canola	plastid	46.23	54.44
VIT_15s0046g02260.t01	Wine grape	nucleus	55.97	54.27
CDY15171	Canola	nucleus	45.6	53.7
PGSC0003DMT400074344	Potato	plastid	47.48	52.25
KRH06589	Soybean	nucleus	54.4	52.11
KRH48063	Soybean	nucleus	53.46	51.36
AT1G01520.3	Thale cress	plastid	44.65	49.48
PGSC0003DMT400028711	Potato	nucleus	44.34	49.3
CDY07188	Canola	nucleus	44.65	47.65
AT4G01280.2	Thale cress	nucleus	44.65	46.86
CDY48515	Canola	nucleus	43.08	44.77
Bra037365.1-P	Field mustard	nucleus	42.77	40.12
PGSC0003DMT400065850	Potato	nucleus	24.21	16.52
PGSC0003DMT400055263	Potato	nucleus	23.9	15.97

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0ZGW9	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400000189	PGSC:PGSC0003DMG400000189	EnsemblPlants:PGSC0003DMT400000546	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF83
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002948221	SEG:seg

Description

MYBR domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400000189]

Coordinates

chr1:-:72598428..72606003

Molecular Weight (calculated)

35464.3 Da

IEP (calculated)

9.997

GRAVY (calculated)

-0.676

Length

318 amino acids

Sequence
(BLAST)

001: MGDPMKTGLM GLHPVQSGTS IHGNLNLDSN TGLGVVVSDD HSKKTRKPYT ITKSRESWTE QEHDKFLEAL QLFDRDWKKI EAFVGSKSVI QIRSHAQKYF
101: LKVQKSGTSE HVPPPRPKRK AAHPYPQKAP KKVMSQVGSI QFQPPGALPE PGFGIGPDPL SVSGNTINFS PWTYDNVPAI STTQMRKDDA QLSSGGVMQN
201: CSSSSNEYIP RINKTKESND QKESQKQMKV MPDFAQVYSF IGSVFDPSTR DHLQRLKKMD PIDIQTALML MKNLSFNLSS PEFEDHRRLL SSYGLGAEKD
301: KMGLPIKTDF RGNAIQAV

Best Arabidopsis Sequence Match ( AT5G52660.2 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.