Factsheet for Os08t0157600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0207300-01
Os03t0762000-01
Os07t0114400-01
Os07t0495100-01
Os08t0157600-01	nucleus
Os10t0564900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	Os08t0157600-01	AT2G46830.1	14978263
AT2G46830.1	Os08t0157600-01	AT2G46830.1	22715042
AT2G46830.1	Os08t0157600-01	AT2G46830.1	22715042
AT2G46830.1	Os07t0495100-01	AT3G60250.1	10535927
AT2G46830.1	Os10t0564900-01	AT3G60250.1	10535927
AT2G46830.1	Os07t0495100-01	AT3G60250.1	14978263
AT2G46830.1	Os10t0564900-01	AT3G60250.1	14978263
AT2G46830.1	Os07t0495100-01	AT3G60250.1	9724822
AT2G46830.1	Os10t0564900-01	AT3G60250.1	9724822
AT2G46830.1	Os07t0495100-01	AT4G17640.1	9724822
AT2G46830.1	Os10t0564900-01	AT4G17640.1	9724822
AT2G46830.1	Os07t0495100-01	AT5G47080.1	9724822
AT2G46830.1	Os10t0564900-01	AT5G47080.1	9724822
AT2G46830.1	Os03t0207300-01	AT5G67380.1	14978263
AT2G46830.1	Os03t0762000-01	AT5G67380.1	14978263
AT2G46830.1	Os07t0114400-01	AT5G67380.1	14978263
AT2G46830.1	Os03t0207300-01	AT5G67380.1	9724822
AT2G46830.1	Os03t0762000-01	AT5G67380.1	9724822
AT2G46830.1	Os07t0114400-01	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029394	Potato	nucleus	7.65	80.88
HORVU7Hr1G070870.2	Barley	nucleus	73.16	73.36
EES13385	Sorghum	nucleus	75.94	73.09
Zm00001d024546_P001	Maize	nucleus	66.62	72.25
TraesCS7A01G299400.3	Wheat	nucleus	72.88	70.24
TraesCS7D01G295400.1	Wheat	nucleus	72.88	70.15
TraesCS7B01G188000.1	Wheat	nucleus	72.18	70.14
CDX80750	Canola	nucleus	34.49	43.74
CDY61862	Canola	nucleus	35.6	43.69
Bra030496.1-P	Field mustard	nucleus	35.47	43.52
CDX90004	Canola	nucleus	34.77	41.12
Bra033291.1-P	Field mustard	nucleus	34.49	40.86
GSMUA_Achr1P06360_001	Banana	nucleus	41.17	40.77
CDY64825	Canola	cytosol, nucleus, plastid	8.9	40.76
CDY15205	Canola	nucleus	35.33	40.71
AT1G01060.7	Thale cress	nucleus	36.3	40.47
KRH06339	Soybean	nucleus	41.59	39.87
KRH47757	Soybean	nucleus	41.03	39.33
CDX80051	Canola	nucleus	29.9	38.95
AT2G46830.1	Thale cress	nucleus	32.68	38.65
KRH68974	Soybean	nucleus	39.92	38.37
VIT_15s0048g02410.t01	Wine grape	nucleus	39.92	37.22
Solyc10g005080.2.1	Tomato	nucleus	38.25	36.09
GSMUA_Achr10P...	Banana	nucleus	29.21	34.77
KRG97259	Soybean	nucleus, plastid	38.8	34.07
Os02t0680700-01	Rice	nucleus	11.82	29.21
CDY41563	Canola	nucleus	30.18	28.86
Os05t0162800-00	Rice	mitochondrion, nucleus	7.79	27.18
Os06t0728700-01	Rice	nucleus	16.97	27.05
Os04t0583900-01	Rice	nucleus	17.39	27.0
Os02t0685200-01	Rice	nucleus	17.8	26.07
Os06t0105800-02	Rice	nucleus	10.71	25.84
Os01t0156000-01	Rice	nucleus	10.01	23.53
Os06t0669700-01	Rice	nucleus	7.09	20.65
CDX80052	Canola	cytosol	0.42	1.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.1	EntrezGene:4344703	ProteinID:BAF22946.1	ProteinID:BAT03905.1
ProteinID:BAT03906.1	ProteinID:EEE68076.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	EnsemblPlantsGene:Os08g0157600	EnsemblPlants:Os08t0157600-01	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF43	UniProt:Q0J7W9	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0000DD93C9	RefSeq:XP_015649844.1	RefSeq:XP_015649845.1	SEG:seg

Description

CIRCADIAN CLOCK ASSOCIATED 1MYB transcription factor, Circadian clock (Os08t0157600-01);Similar to LHY protein. (Os08t0157600-02);Similar to LHY protein. (Os08t0157600-03)

Coordinates

chr8:+:3360865..3373384

Molecular Weight (calculated)

78524.4 Da

IEP (calculated)

5.780

GRAVY (calculated)

-0.814

Length

719 amino acids

Sequence
(BLAST)

001: MEINSSGEEA VVKVRKPYTI TKQRERWTEA EHNRFLEALK LYGRAWQRIE EHVGTKTAVQ IRSHAQKFFT KLEKEAINNG TSPGQAHDID IPPPRPKRKP
101: NSPYPRKSCL SSETSTREVQ NDKATISNMT NNSTAQMAGD AALEKLQRKE ISEKGSCSEV LNLFREVPSA SFSSVNKSSS NHGASRGLEP TKTEVKDVVI
201: LERDSISNGA GKDAKDINDQ EMERLNGIHI SSKPDHSHEN CLDTSSQQFK PKSNSVETTY VDWSAAKASH YQMDRNGVTG FQATGTEGSH PDQTSDQMGG
301: ASGTMNQCIH PTLPVDPKFD GNAAAQPFPH NYAAFAPMMQ CHCNQDAYRS FANMSSTFSS MLVSTLLSNP AIHAAARLAA SYWPTVDGNT PDPNQENLSE
401: SAQGSHAGSP PNMASIVTAT VAAASAWWAT QGLLPLFPPP IAFPFVPAPS APFSTADVQR AQEKDIDCPM DNAQKELQET RKQDNFEAMK VIVSSETDES
501: GKGEVSLHTE LKISPADKAD TKPAAGAETS DVFGNKKKQD RSSCGSNTPS SSDIEADNAP ENQEKANDKA KQASCSNSSA GDNNHRRFRS SASTSDSWKE
601: VSEEGRLAFD ALFSRERLPQ SFSPPQVEGS KEISKEEEDE VTTVTVDLNK NAAIIDQELD TADEPRASFP NELSNLKLKS RRTGFKPYKR CSVEAKENRV
701: PASDEVGTKR IRLESEAST

Best Arabidopsis Sequence Match ( AT1G01060.5 )
(BLAST)

001: MEELGNELKN ILGQRLLFRS EVMHKSSSQS HPYGNQTSLP YRTGHEVTLS SLPRKIRFGK AHSFWFTFQL EKEAEVKGIP VCQALDIEIP PPRPKRKPNT
101: PYPRKPGNNG TSSSQVSSAK DAKLVSSASS SQLNQAFLDL EKMPFSEKTS TGKENQDENC SGVSTVNKYP LPTKQVSGDI ETSKTSTVDN AVQDVPKKNK
201: DKDGNDGTTV HSMQNYPWHF HADIVNGNIA KCPQNHPSGM VSQDFMFHPM REETHGHANL QATTASATTT ASHQAFPACH SQDDYRSFLQ ISSTFSNLIM
301: STLLQNPAAH AAATFAASVW PYASVGNSGD SSTPMSSSPP SITAIAAATV AAATAWWASH GLLPVCAPAP ITCVPFSTVA VPTPAMTEMD TVENTQPFEK
401: QNTALQDQNL ASKSPASSSD DSDETGVTKL NADSKTNDDK IEEVVVTAAV HDSNTAQKKN LVDRSSCGSN TPSGSDAETD ALDKMEKDKE DVKETDENQP
501: DVIELNNRKI KMRDNNSNNN ATTDSWKEVS EEGRIAFQAL FARERLPQSF SPPQVAENVN RKQSDTSMPL APNFKSQDSC AADQEGVVMI GVGTCKSLKT
601: RQTGFKPYKR CSMEVKESQV GNINNQSDEK VCKRLRLEGE AST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.