CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97259	nucleus
KRH04471
KRH06339	nucleus
KRH28388
KRH47757	nucleus
KRH58068
KRH68974	nucleus
KRH77093

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	KRG97259	AT2G46830.1	14978263
AT2G46830.1	KRH06339	AT2G46830.1	14978263
AT2G46830.1	KRH47757	AT2G46830.1	14978263
AT2G46830.1	KRH68974	AT2G46830.1	14978263
AT2G46830.1	KRG97259	AT2G46830.1	22715042
AT2G46830.1	KRH06339	AT2G46830.1	22715042
AT2G46830.1	KRH47757	AT2G46830.1	22715042
AT2G46830.1	KRH68974	AT2G46830.1	22715042
AT2G46830.1	KRG97259	AT2G46830.1	22715042
AT2G46830.1	KRH06339	AT2G46830.1	22715042
AT2G46830.1	KRH47757	AT2G46830.1	22715042
AT2G46830.1	KRH68974	AT2G46830.1	22715042
AT2G46830.1	KRH04471	AT5G67380.1	14978263
AT2G46830.1	KRH28388	AT5G67380.1	14978263
AT2G46830.1	KRH58068	AT5G67380.1	14978263
AT2G46830.1	KRH77093	AT5G67380.1	14978263
AT2G46830.1	KRH04471	AT5G67380.1	9724822
AT2G46830.1	KRH28388	AT5G67380.1	9724822
AT2G46830.1	KRH58068	AT5G67380.1	9724822
AT2G46830.1	KRH77093	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029394	Potato	nucleus	7.75	85.29
KRG97259	Soybean	nucleus, plastid	91.18	83.27
KRH06339	Soybean	nucleus	73.8	73.6
KRH47757	Soybean	nucleus	73.13	72.93
VIT_15s0048g02410.t01	Wine grape	nucleus	63.64	61.74
Solyc10g005080.2.1	Tomato	nucleus	52.01	51.05
AT1G01060.7	Thale cress	nucleus	43.58	50.54
CDX90004	Canola	nucleus	41.04	50.49
Bra033291.1-P	Field mustard	nucleus	40.91	50.41
CDY15205	Canola	nucleus	41.84	50.16
CDY61862	Canola	nucleus	38.1	48.63
CDX80750	Canola	nucleus	36.76	48.5
Bra030496.1-P	Field mustard	nucleus	37.83	48.29
CDX80051	Canola	nucleus	34.49	46.74
CDY64825	Canola	cytosol, nucleus, plastid	9.76	46.5
AT2G46830.1	Thale cress	nucleus	37.3	45.89
GSMUA_Achr1P06360_001	Banana	nucleus	40.24	41.46
Os08t0157600-01	Rice	nucleus	38.37	39.92
Zm00001d049543_P003	Maize	nucleus	37.57	39.03
HORVU7Hr1G070870.2	Barley	nucleus	36.76	38.35
EES13385	Sorghum	nucleus	38.1	38.15
GSMUA_Achr10P...	Banana	nucleus	30.75	38.08
TraesCS7B01G188000.1	Wheat	nucleus	35.96	36.35
TraesCS7A01G299400.3	Wheat	nucleus	36.23	36.33
TraesCS7D01G295400.1	Wheat	nucleus	35.7	35.74
CDY41563	Canola	nucleus	33.96	33.78
Zm00001d024546_P001	Maize	nucleus	29.41	33.18
KRH20042	Soybean	nucleus	12.17	31.71
KRH17280	Soybean	nucleus	17.78	30.5
KRG98008	Soybean	nucleus	14.3	29.64
KRH72927	Soybean	nucleus	16.71	28.67
KRH67632	Soybean	nucleus	10.96	27.42
KRH08856	Soybean	nucleus	10.83	26.91
KRH40382	Soybean	nucleus	10.29	26.83
KRG95914	Soybean	nucleus	10.29	26.64
KRH35235	Soybean	nucleus	11.1	26.6
KRH32383	Soybean	plastid	10.43	26.53
KRH06589	Soybean	nucleus	11.63	26.2
KRH48063	Soybean	nucleus	11.5	25.98
KRH00849	Soybean	nucleus	10.7	25.97
KRH38938	Soybean	nucleus	16.18	25.97
KRH09476	Soybean	nucleus	16.44	25.79
KRG91589	Soybean	nucleus	11.23	25.53
KRH19794	Soybean	nucleus	9.36	23.26
KRH38371	Soybean	nucleus	10.96	23.23
CDX80052	Canola	cytosol	0.4	1.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.1	EntrezGene:778086	EMBL:ACUP02002128	UniProt:C0SNP2
EMBL:EU076434	EnsemblPlantsGene:GLYMA_03G261800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	ProteinID:KRH68973.1	EnsemblPlants:KRH68974	ProteinID:KRH68974	ProteinID:KRH68974.1	ProteinID:KRH68975.1
ProteinID:KRH68976.1	ProteinID:KRH68977.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR12802	PANTHER:PTHR12802:SF43	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI000195E3E4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:45501753..45510465

Molecular Weight (calculated)

82088.4 Da

IEP (calculated)

6.144

GRAVY (calculated)

-0.744

Length

748 amino acids

Sequence
(BLAST)

001: MDADSSGEEV VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAFVKG VPIGQALDID IPPPRPKRKP
101: SNPYPRKTNV GAPTLHSEAK HGKSLISIAS SHGKQALDLE KEPLPEKHNV DLRPTTVKEN KDGSCLNVFT IIQEAPCSSV SSANKNSTSI SVPLRNSCAL
201: REFIPSVKEV ITRDETNESF VTDELENQKL EIDDGKHTQK TNDTCEVSKL ENSGASELVQ TEKTDGRNCA LTIDGVPGNQ NYPRHVPVHV VDGNLGTSTQ
301: NLSPDMVFQD SIFQPKGGVN RQPNLVTNSA TSHISECQNN AARSSIHQSF PPSPPFAQDD YHSFLHMSST FSSLIVSTLL QNPAAHAAAS FAATFWPYAN
401: AETSADSPVC TPDFPSRQIG SPPSVTAIAA ATVAAATAWW AAHGLLPLCG PLHTAFACPP ASATTVPSMI IDESPQKTER GEIKPQNPPL QDQIPDPEHS
501: EAQHSAPKSP AVSSSKSEDR GDANLDTSPK ATNHEMNQAI SENPDSNKMK GRKPVDRSSC GSNTTSSSEE TELLEKDEKE KEEPKTPDAN VLDTELSNRR
601: SRSISNLTDS WKEVSEEGRL AFQALFSREV LPQSFSPTHH LINKDNQIDS IKDNELNTDY KDEDLESKKC SSICDGVQKN LLFVKDNNEE EGLLTIGLGP
701: GKLKTRRTGF KPYKRCSVEA NENRIGTACI QGEEKGPKRL RLNGEAST

Best Arabidopsis Sequence Match ( AT1G01060.1 )
(BLAST)

001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKQVSG DIETSKTSTV DNAVQDVPKK
201: NKDKDGNDGT TVHSMQNYPW HFHADIVNGN IAKCPQNHPS GMVSQDFMFH PMREETHGHA NLQATTASAT TTASHQAFPA CHSQDDYRSF LQISSTFSNL
301: IMSTLLQNPA AHAAATFAAS VWPYASVGNS GDSSTPMSSS PPSITAIAAA TVAAATAWWA SHGLLPVCAP APITCVPFST VAVPTPAMTE MDTVENTQPF
401: EKQNTALQDQ NLASKSPASS SDDSDETGVT KLNADSKTND DKIEEVVVTA AVHDSNTAQK KNLVDRSSCG SNTPSGSDAE TDALDKMEKD KEDVKETDEN
501: QPDVIELNNR KIKMRDNNSN NNATTDSWKE VSEEGRIAFQ ALFARERLPQ SFSPPQVAEN VNRKQSDTSM PLAPNFKSQD SCAADQEGVV MIGVGTCKSL
601: KTRQTGFKPY KRCSMEVKES QVGNINNQSD EKVCKRLRLE GEAST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.