CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97259	nucleus
KRH04471
KRH06339	nucleus
KRH28388
KRH47757	nucleus
KRH58068
KRH68974	nucleus
KRH77093

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	KRG97259	AT2G46830.1	14978263
AT2G46830.1	KRH06339	AT2G46830.1	14978263
AT2G46830.1	KRH47757	AT2G46830.1	14978263
AT2G46830.1	KRH68974	AT2G46830.1	14978263
AT2G46830.1	KRG97259	AT2G46830.1	22715042
AT2G46830.1	KRH06339	AT2G46830.1	22715042
AT2G46830.1	KRH47757	AT2G46830.1	22715042
AT2G46830.1	KRH68974	AT2G46830.1	22715042
AT2G46830.1	KRG97259	AT2G46830.1	22715042
AT2G46830.1	KRH06339	AT2G46830.1	22715042
AT2G46830.1	KRH47757	AT2G46830.1	22715042
AT2G46830.1	KRH68974	AT2G46830.1	22715042
AT2G46830.1	KRH04471	AT5G67380.1	14978263
AT2G46830.1	KRH28388	AT5G67380.1	14978263
AT2G46830.1	KRH58068	AT5G67380.1	14978263
AT2G46830.1	KRH77093	AT5G67380.1	14978263
AT2G46830.1	KRH04471	AT5G67380.1	9724822
AT2G46830.1	KRH28388	AT5G67380.1	9724822
AT2G46830.1	KRH58068	AT5G67380.1	9724822
AT2G46830.1	KRH77093	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47757	Soybean	nucleus	94.67	94.67
PGSC0003DMT400029394	Potato	nucleus	7.6	83.82
KRH68974	Soybean	nucleus	73.6	73.8
KRG97259	Soybean	nucleus, plastid	73.47	67.28
VIT_15s0048g02410.t01	Wine grape	nucleus	63.2	61.48
AT1G01060.7	Thale cress	nucleus	45.2	52.56
Solyc10g005080.2.1	Tomato	nucleus	53.07	52.23
Bra033291.1-P	Field mustard	nucleus	41.87	51.73
CDX90004	Canola	nucleus	41.87	51.64
CDY15205	Canola	nucleus	42.53	51.12
CDY61862	Canola	nucleus	39.73	50.85
Bra030496.1-P	Field mustard	nucleus	39.47	50.51
CDX80750	Canola	nucleus	38.13	50.44
CDX80051	Canola	nucleus	35.07	47.64
AT2G46830.1	Thale cress	nucleus	37.73	46.55
CDY64825	Canola	cytosol, nucleus, plastid	9.73	46.5
GSMUA_Achr1P06360_001	Banana	nucleus	40.93	42.29
Os08t0157600-01	Rice	nucleus	39.87	41.59
Zm00001d049543_P003	Maize	nucleus	38.27	39.86
EES13385	Sorghum	nucleus	39.2	39.36
HORVU7Hr1G070870.2	Barley	nucleus	37.47	39.19
TraesCS7B01G188000.1	Wheat	nucleus	36.93	37.43
TraesCS7A01G299400.3	Wheat	nucleus	37.2	37.4
GSMUA_Achr10P...	Banana	nucleus	29.87	37.09
TraesCS7D01G295400.1	Wheat	nucleus	36.93	37.08
Zm00001d024546_P001	Maize	nucleus	31.33	35.44
CDY41563	Canola	nucleus	34.27	34.18
KRH20042	Soybean	nucleus	11.87	31.01
KRH17280	Soybean	nucleus	17.6	30.28
KRG98008	Soybean	nucleus	14.27	29.64
KRH72927	Soybean	nucleus	16.4	28.21
KRH67632	Soybean	nucleus	10.53	26.42
KRG95914	Soybean	nucleus	10.13	26.3
KRH40382	Soybean	nucleus	9.87	25.78
KRH35235	Soybean	nucleus	10.67	25.64
KRH08856	Soybean	nucleus	10.27	25.58
KRH32383	Soybean	plastid	10.0	25.51
KRH00849	Soybean	nucleus	10.13	24.68
KRH38938	Soybean	nucleus	15.2	24.46
KRH09476	Soybean	nucleus	15.47	24.32
KRH19794	Soybean	nucleus	9.73	24.25
KRH06589	Soybean	nucleus	10.67	24.1
KRG91589	Soybean	nucleus	10.53	24.01
KRH48063	Soybean	nucleus	10.53	23.87
KRH38371	Soybean	nucleus	10.4	22.1
CDX80052	Canola	cytosol	0.53	1.85

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100271888	MapMan:15.5.2.2	MapMan:27.1.1	EMBL:ACUP02009827	ncoils:Coil
EnsemblPlantsGene:GLYMA_16G017400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:I1MKB1
InterPro:IPR017930	ProteinID:KRH06337.1	ProteinID:KRH06338.1	EnsemblPlants:KRH06339	ProteinID:KRH06339	ProteinID:KRH06339.1
ProteinID:KRH06340.1	ProteinID:KRH06341.1	ProteinID:KRH06342.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF43	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI00023D72EA	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:1526133..1539596

Molecular Weight (calculated)

82416.7 Da

IEP (calculated)

6.196

GRAVY (calculated)

-0.787

Length

750 amino acids

Sequence
(BLAST)

001: MDAYSSGEEV VVKTRKPYTI TKQRERWTEE EHNRFLEALK LHGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEALVKG VPIGQALDID IPPPRPKRKP
101: NNPYPRKTRI GTTSLHSGAK DGKLNLVESS HVNQALDLKK EPLPEKHDLD EGLTTVKENK DENHAKVFTL LQEVPCSSVS SANESSITMS VPLGNPCAFK
201: EITPSVKEVI ARDEKTESFV TVEPENGKLE INDGKQTNGT SKDSRLEDSD ALHMKLVQNE KPDGLDCELT IDGMQGNQNY PRHVTVHVVD GNLGTNTQNP
301: SQDMLFRDSM FQPIGGVNGQ RNVFTNTAPS NTSESQNNTA RSSVHQSFLP YPPFTQHNQD DYQSFLHMSS TFSNLIVSTL MQNPAAHAAA SFAATFWPYA
401: NPETSANSPR CSQGGFTNRQ IGSPPSVAAI AAATVAAATA WWAAHGLLPL CAPLHTSFAC PASVTTVPSM NTGEAPALKA EQEKTTLQNP PLQDQMLDPE
501: YSEAQQAQHS ASKSPAAILS DSESGDAKLN TSSKVTDHET NKTISEHLDS NKTKGRKPVD RSSCGSNTAS SSDVETDALE KGEKGKEEPE IPDANQLAIE
601: FSNRRRSVSN LTDSWKEVSE EGRLAFQALF SREVLPQSFS PPHALKNTDH QMDNANDNKQ NIDDKDEDLD GSKKCSSNYE AMQKNLLFVE NNEGLLTIGL
701: GQGKLKTHRT GFKPYKRCSM EAKENRVGAS SNQGEEQGCK RIRLEGETST

Best Arabidopsis Sequence Match ( AT1G01060.1 )
(BLAST)

001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKQVSG DIETSKTSTV DNAVQDVPKK
201: NKDKDGNDGT TVHSMQNYPW HFHADIVNGN IAKCPQNHPS GMVSQDFMFH PMREETHGHA NLQATTASAT TTASHQAFPA CHSQDDYRSF LQISSTFSNL
301: IMSTLLQNPA AHAAATFAAS VWPYASVGNS GDSSTPMSSS PPSITAIAAA TVAAATAWWA SHGLLPVCAP APITCVPFST VAVPTPAMTE MDTVENTQPF
401: EKQNTALQDQ NLASKSPASS SDDSDETGVT KLNADSKTND DKIEEVVVTA AVHDSNTAQK KNLVDRSSCG SNTPSGSDAE TDALDKMEKD KEDVKETDEN
501: QPDVIELNNR KIKMRDNNSN NNATTDSWKE VSEEGRIAFQ ALFARERLPQ SFSPPQVAEN VNRKQSDTSM PLAPNFKSQD SCAADQEGVV MIGVGTCKSL
601: KTRQTGFKPY KRCSMEVKES QVGNINNQSD EKVCKRLRLE GEAST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.