Factsheet for Bra030496.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61862	Canola	nucleus	99.49	99.49
PGSC0003DMT400029394	Potato	nucleus	8.87	76.47
AT1G01060.7	Thale cress	nucleus	74.57	67.75
Bra033291.1-P	Field mustard	nucleus	67.41	65.07
Bra004503.1-P	Field mustard	nucleus	38.4	40.76
KRH47757	Soybean	nucleus	50.85	39.73
KRH06339	Soybean	nucleus	50.51	39.47
VIT_15s0048g02410.t01	Wine grape	nucleus	50.34	38.26
KRH68974	Soybean	nucleus	48.29	37.83
Solyc10g005080.2.1	Tomato	nucleus	48.46	37.27
Os08t0157600-01	Rice	nucleus	43.52	35.47
KRG97259	Soybean	nucleus, plastid	49.15	35.16
HORVU7Hr1G070870.2	Barley	nucleus	41.64	34.03
Zm00001d049543_P003	Maize	nucleus	41.3	33.61
EES13385	Sorghum	nucleus	42.83	33.6
GSMUA_Achr1P06360_001	Banana	nucleus	40.27	32.51
TraesCS7A01G299400.3	Wheat	nucleus	40.96	32.17
TraesCS7B01G188000.1	Wheat	nucleus	40.44	32.03
TraesCS7D01G295400.1	Wheat	nucleus	40.78	31.99
Zm00001d024546_P001	Maize	nucleus	33.11	29.26
Bra039503.1-P	Field mustard	nucleus	16.38	28.83
Bra025914.1-P	Field mustard	nucleus	16.21	28.44
GSMUA_Achr10P...	Banana	nucleus	29.01	28.15
Bra008563.1-P	Field mustard	nucleus	16.72	27.61
Bra023610.1-P	Field mustard	nucleus	16.55	26.15
Bra006394.1-P	Field mustard	nucleus	15.87	25.55
Bra033257.1-P	Field mustard	plastid	11.6	25.19
Bra003117.1-P	Field mustard	nucleus	13.14	25.16
Bra029111.1-P	Field mustard	nucleus	13.48	24.69
Bra034074.1-P	Field mustard	nucleus	10.75	23.95
Bra005751.1-P	Field mustard	nucleus	11.43	23.67
Bra024430.1-P	Field mustard	mitochondrion, nucleus	8.36	22.9
Bra029778.1-P	Field mustard	nucleus	11.6	22.37
Bra009562.1-P	Field mustard	nucleus	11.6	21.79
Bra037365.1-P	Field mustard	nucleus	11.26	19.47
Bra004502.1-P	Field mustard	cytosol	0.51	1.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.1	EnsemblPlantsGene:Bra030496	EnsemblPlants:Bra030496.1	EnsemblPlants:Bra030496.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4ENX6
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF82
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002545C92	SEG:seg

Description

AT1G01060 (E=5e-099) LHY, LHY1 | LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor

Coordinates

chrA08:-:21579864..21582579

Molecular Weight (calculated)

64164.9 Da

IEP (calculated)

5.906

GRAVY (calculated)

-0.899

Length

586 amino acids

Sequence
(BLAST)

001: MDTNTSDGPG EELLTKARKP YTITKQRERW TEDEHDRFLE ALRLYGRAWQ RIQENIGTKT AVQIRSHAQK FFTKLEKEAE AKGIKALDIE IPPPRPKRKP
101: NAPYPRKPGP SSSQAKQLVS SSECNQQAFL DLEKVPLPEK ISTGKENQEE NCSGVNKYPL PNKVVTPGKR KTFMESSDPS LRKASADNET SKASNVDNNV
201: VHEKNKDRDD DDDDDDDGGL HSARHHPATT TSPSAATTTT SHQAFPAFPF QHDYRSFLHM SSTFSNLIMS TLLQNPAAHA AATFAASAWP FTTNAGDSST
301: QMSSSPPTIA AIVAATVAAA TAWWASHGLL PTPVPLPAVP VPTPAAMDNV GNDHLEKQST AFQEQNMASK SPDSSSDDSD ETGITKIKAD GDKEEVVAAL
401: QDSNVSHKKN PVDRSSCGSN TPSGSDVETD ALEKEKEADA NQPSVIELGN RRSKIRDNNN NQTTDSWKEV SQGGRIAFQA LFARERLPQS FSPPQVEENV
501: NGKQISDTSM PLAHNNLNKI QDSCNADQES AVDEEPGKSL KMRETGFKPY KRCSMEAKES QVGNANNHND EKVCCKRLRL EAEAST

Best Arabidopsis Sequence Match ( AT1G01060.4 )
(BLAST)

001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.