Factsheet for Bra003117.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52837	Canola	nucleus	99.67	99.67
Bra029111.1-P	Field mustard	nucleus	88.24	84.38
AT5G52660.2	Thale cress	nucleus	86.93	80.36
KRH08856	Soybean	nucleus	59.8	60.8
KRH35235	Soybean	nucleus	60.78	59.62
TraesCS6B01G266800.3	Wheat	nucleus	55.56	59.44
TraesCS6D01G239800.1	Wheat	nucleus	55.56	59.44
HORVU6Hr1G066000.1	Barley	nucleus	54.9	59.36
KXG31009	Sorghum	nucleus	54.25	59.07
Zm00001d017609_P011	Maize	nucleus	52.29	58.61
Os02t0680700-01	Rice	nucleus	55.56	58.42
Solyc06g036300.2.1	Tomato	nucleus, plastid	57.19	58.14
GSMUA_Achr5P10280_001	Banana	nucleus	50.33	56.62
KRG91589	Soybean	nucleus	60.78	56.53
VIT_16s0050g01180.t01	Wine grape	nucleus	61.11	55.49
Bra033257.1-P	Field mustard	plastid	48.37	54.81
GSMUA_Achr7P17560_001	Banana	nucleus	52.61	53.67
PGSC0003DMT400074344	Potato	plastid	50.33	53.29
KRH38371	Soybean	nucleus	59.15	51.27
Bra034074.1-P	Field mustard	nucleus	43.46	50.57
HORVU0Hr1G031850.1	Barley	nucleus, plastid	54.9	50.45
TraesCS6A01G258600.2	Wheat	nucleus	55.23	49.42
Os06t0669700-01	Rice	nucleus	39.87	49.39
HORVU7Hr1G001830.3	Barley	nucleus	43.14	48.71
Os06t0105800-02	Rice	nucleus	47.39	48.66
Bra029778.1-P	Field mustard	nucleus	48.04	48.36
TraesCS7D01G014900.2	Wheat	nucleus	44.12	47.7
Bra005751.1-P	Field mustard	nucleus	44.12	47.7
TraesCS7A01G017600.1	Wheat	nucleus	43.14	47.48
KXG20579	Sorghum	nucleus	51.63	46.61
TraesCS4A01G474100.2	Wheat	nucleus	46.08	45.63
Bra009562.1-P	Field mustard	nucleus	46.08	45.19
EER89043	Sorghum	nucleus	46.73	45.11
TraesCS7A01G470700.1	Wheat	nucleus	50.0	45.0
TraesCS7B01G372500.1	Wheat	nucleus	50.0	44.87
TraesCS7D01G458000.1	Wheat	nucleus	50.0	44.87
Zm00001d046974_P002	Maize	nucleus	48.37	43.92
GSMUA_Achr1P03720_001	Banana	nucleus	47.06	41.86
Bra037365.1-P	Field mustard	nucleus	46.08	41.59
Zm00001d036632_P002	Maize	nucleus	48.69	41.5
Zm00001d045581_P002	Maize	nucleus	42.81	41.46
GSMUA_Achr1P06480_001	Banana	plastid	54.25	38.6
HORVU7Hr1G107550.3	Barley	nucleus	50.33	36.41
GSMUA_Achr1P15370_001	Banana	mitochondrion	14.38	36.07
Bra024430.1-P	Field mustard	mitochondrion, nucleus	14.71	21.03
Bra039503.1-P	Field mustard	nucleus	22.88	21.02
Bra008563.1-P	Field mustard	nucleus	23.53	20.28
Bra006394.1-P	Field mustard	nucleus	22.88	19.23
Bra023610.1-P	Field mustard	nucleus	22.88	18.87
Bra025914.1-P	Field mustard	nucleus	20.59	18.86
Bra004503.1-P	Field mustard	nucleus	24.84	13.77
Bra030496.1-P	Field mustard	nucleus	25.16	13.14
Bra033291.1-P	Field mustard	nucleus	25.16	12.69
Bra004502.1-P	Field mustard	cytosol	0.65	0.93

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	EnsemblPlantsGene:Bra003117	EnsemblPlants:Bra003117.1	EnsemblPlants:Bra003117.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4CFY5
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF83
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000254373A	SEG:seg

Description

AT5G52660 (E=1e-116) | myb family transcription factor

Coordinates

chrA10:-:4990255..4992281

Molecular Weight (calculated)

33795.9 Da

IEP (calculated)

9.442

GRAVY (calculated)

-0.661

Length

306 amino acids

Sequence
(BLAST)

001: MNPADGSLLD PNGTMTVPAI GPLTSSEDLS KKIRKPYTIS KSRESWTEPE HDKFLEALQL FDRDWKKIEA FIGSKTVIQI RSHAQKYFLK VQKSGTAEHL
101: PPPRPKRKAA HPYPQKAQKN VQPQVPGSFK STAEPNDPSY MFRPESSSML MTSPPPTAAA AAPWINNVQT ISFTPLPKET AGAGANNNCS SSSENTPRPR
201: SNKDTNVQAN PGHSLRVLPD FGQVYSFIGS VFDPYASNHL QKLKKMDPID VETVLLLMRN LSINLSSPDF EDHRRLLSSY DIGSETAADH GGVFKTLNKE
301: PPEIST

Best Arabidopsis Sequence Match ( AT5G52660.2 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.