Factsheet for TraesCS4A01G474100.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G017600.1	Wheat	nucleus	82.52	91.73
Os06t0105800-02	Rice	nucleus	63.43	65.77
EER89043	Sorghum	nucleus	62.46	60.88
Zm00001d045581_P002	Maize	nucleus	55.02	53.8
TraesCS7A01G470700.1	Wheat	nucleus	58.58	53.24
GSMUA_Achr7P17560_001	Banana	nucleus	49.19	50.67
Solyc06g036300.2.1	Tomato	nucleus, plastid	46.93	48.17
KRH08856	Soybean	nucleus	46.6	47.84
KRH35235	Soybean	nucleus	47.25	46.79
CDY52837	Canola	nucleus	45.63	46.08
Bra003117.1-P	Field mustard	nucleus	45.63	46.08
Bra029111.1-P	Field mustard	nucleus	46.93	45.31
PGSC0003DMT400074344	Potato	plastid	42.07	44.98
CDY56155	Canola	nucleus	46.93	44.89
KRG91589	Soybean	nucleus	47.25	44.38
AT5G52660.2	Thale cress	nucleus	47.25	44.11
CDY27841	Canola	nucleus	40.45	43.71
VIT_16s0050g01180.t01	Wine grape	nucleus	46.93	43.03
TraesCS6A01G258600.2	Wheat	nucleus	46.93	42.4
CDY51831	Canola	vacuole	47.25	41.95
KRH38371	Soybean	nucleus	46.28	40.51
TraesCS1A01G107700.1	Wheat	mitochondrion	24.92	35.16
TraesCS3A01G308500.1	Wheat	nucleus	30.42	31.54
TraesCS2A01G456600.1	Wheat	nucleus	24.6	18.18
TraesCS6A01G261100.1	Wheat	nucleus	25.89	16.91
TraesCS7A01G553800.1	Wheat	nucleus	23.3	14.15
TraesCS7A01G299400.3	Wheat	nucleus	26.54	10.99

Protein Annotations

EnsemblPlants:TraesCS4A01G474100.2	EnsemblPlantsGene:TraesCS4A01G474100	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	InterPro:SANT/Myb
PANTHER:PTHR12802	PANTHER:PTHR12802:SF85	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	TIGRFAMs:TIGR01557	MapMan:15.5.2.2	MapMan:27.1.6.2	:	:

Description

No Description!

Coordinates

chr4A:-:733696380..733700079

Molecular Weight (calculated)

34185.1 Da

IEP (calculated)

6.185

GRAVY (calculated)

-0.577

Length

309 amino acids

Sequence
(BLAST)

001: MAAVMESSSV PGVDGGEGAE GRVRKPYTIT KSRESWTDPE HDKFIEALLL FDRDWRKIEA FVGSKTVIQF CWQIRSHAQK YFLKVQKNGT GEHLPPPRPK
101: RKAAHPYPHN KASKKAPEVD LPQQPPHVVE QGRVIPMDAP TVATNSSANE DTFPSWDDVL TQPYSPRHTQ DLGAANNSSS SIECQSGTWP ASDAIGQEIW
201: PTSDAIEQEI VLPALHAMPD FAQVYNFLGG VFDPDTTGHL QKLREMDPID AETVLQLMKN LSVNLSSPDF ETHRRMLSSH GGGMGQARHE SVGDPGSLLR
301: PFAFHSCNL

Best Arabidopsis Sequence Match ( AT3G09600.1 )
(BLAST)

001: MSSSPSRNPT NAEAPPPPPT STDAVAEGSS KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED FVGSKTVIQI RSHAQKYFLK VQKNGTLAHV
101: PPPRPKRKAA HPYPQKASKN AQMPLQVSTS FTTTRNGDMP GYASWDDASM LLNRVISPQH ELATLRGAEA DIGSKGLLNV SSPSTSGMGS SSRTVSGSEI
201: VRKAKQPPVL HGVPDFAEVY NFIGSVFDPE TRGHVEKLKE MDPINFETVL LLMRNLTVNL SNPDLESTRK VLLSYDNVTT ELPSVVSLVK NSTSDKSA

Arabidopsis Description

RVE8Protein REVEILLE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.