Factsheet for TraesCS6A01G261100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G241900.1	Wheat	nucleus	91.54	96.44
TraesCS6B01G288500.1	Wheat	nucleus	90.7	95.76
HORVU6Hr1G066450.2	Barley	golgi, mitochondrion, plastid, vacuole	85.41	74.68
Os02t0685200-01	Rice	nucleus	60.68	58.45
EES05718	Sorghum	nucleus	53.7	55.82
Zm00001d051480_P001	Maize	nucleus	44.4	53.16
Zm00001d017642_P001	Maize	nucleus	50.11	50.75
TraesCS2A01G456600.1	Wheat	nucleus	32.56	36.84
GSMUA_Achr8P13440_001	Banana	nucleus	28.54	35.62
Solyc03g098320.2.1	Tomato	nucleus	27.91	28.82
PGSC0003DMT400065850	Potato	nucleus	27.48	27.9
TraesCS7A01G017600.1	Wheat	nucleus	15.43	26.26
TraesCS4A01G474100.2	Wheat	nucleus	16.91	25.89
TraesCS7A01G553800.1	Wheat	nucleus	27.7	25.74
GSMUA_AchrUn_...	Banana	nucleus	24.74	25.05
TraesCS1A01G107700.1	Wheat	mitochondrion	11.42	24.66
GSMUA_Achr11P...	Banana	nucleus	24.52	24.27
TraesCS3A01G308500.1	Wheat	nucleus	14.59	23.15
TraesCS6A01G258600.2	Wheat	nucleus	16.28	22.51
TraesCS7A01G470700.1	Wheat	nucleus	15.01	20.88
TraesCS7A01G299400.3	Wheat	nucleus	25.79	16.35

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR12802	PANTHER:PTHR12802:SF60	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
EnsemblPlantsGene:TraesCS6A01G261100	EnsemblPlants:TraesCS6A01G261100.1	TIGR:cd00167	SEG:seg	:	:

Description

No Description!

Coordinates

chr6A:-:484567250..484570657

Molecular Weight (calculated)

50660.0 Da

IEP (calculated)

9.412

GRAVY (calculated)

-0.930

Length

473 amino acids

Sequence
(BLAST)

001: MACTQENAMA TDESTGDHRG SRPSSHDMDL SGDDHVPKAR KPYTITKQRE KWTEEEHKRF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVTRE
101: SSGSSSGSGA AAATATAAIQ IPPPRPKRKP THPYPRKADD GAAAGGKHGP GLTHLERPPV RMGEQEEGSP TSVLTASRVE ASGGRFSNNS SGSRSPVPSA
201: AGSLYGSSVD RGDGCLSPNT KASEFTANGD VKEGSCTGSA TSVLKLFGKK VVVNDSFQKP NTSTGNPQNG GDVGTEASDD TTTQGSRNLP SGGATEGSSW
301: SPWPSSMQQF VYFVPQPDGF ATQSAVPWFG TLPGATFYQQ AVAPNQHQHQ RHRSETADHK FMQREGSWTG SNTGPGSAAH NSDAADSRGR GNSSESDKTL
401: VPRLTKCESS VSVSLQRGFM SYKRCAAESE SLRSEAPREE TNGLARRQQR LRCGTQRRGG VAAERCRSGE EDN

Best Arabidopsis Sequence Match ( AT5G17300.1 )
(BLAST)

001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL

Arabidopsis Description

RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.