Factsheet for HORVU6Hr1G066450.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, vacuole

Predictor Summary:

plastid 1
mitochondrion 2
golgi 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plastid, vacuole
Any Predictor:	golgi, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
TargetP:	mitochondrion
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G241900.1	Wheat	nucleus	75.97	91.54
TraesCS6B01G288500.1	Wheat	nucleus	75.23	90.85
TraesCS6A01G261100.1	Wheat	nucleus	74.68	85.41
Os02t0685200-01	Rice	nucleus	53.05	58.45
EES05718	Sorghum	nucleus	47.32	56.26
Zm00001d051480_P001	Maize	nucleus	39.37	53.92
Zm00001d017642_P001	Maize	nucleus	44.18	51.18
HORVU2Hr1G104580.2	Barley	nucleus	30.5	35.71
GSMUA_Achr8P13440_001	Banana	nucleus	24.77	35.36
Solyc03g098320.2.1	Tomato	nucleus	23.84	28.17
HORVU6Hr1G066000.1	Barley	nucleus	14.42	27.56
PGSC0003DMT400065850	Potato	nucleus	23.48	27.25
HORVU7Hr1G121210.4	Barley	nucleus	24.03	26.48
HORVU7Hr1G001830.3	Barley	nucleus	13.12	26.2
GSMUA_AchrUn_...	Banana	nucleus	22.0	25.48
GSMUA_Achr11P...	Banana	nucleus	21.81	24.69
HORVU0Hr1G031850.1	Barley	nucleus, plastid	14.42	23.42
HORVU7Hr1G070870.2	Barley	nucleus	24.03	18.13
HORVU7Hr1G107550.3	Barley	nucleus	13.49	17.26
HORVU3Hr1G025030.1	Barley	nucleus	13.68	17.25

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	UniProt:A0A287UHA2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:HORVU6Hr1G066450	EnsemblPlants:HORVU6Hr1G066450.2	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF60	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000B46420D	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr6H:+:460086049..460089295

Molecular Weight (calculated)

58384.4 Da

IEP (calculated)

9.935

GRAVY (calculated)

-0.635

Length

541 amino acids

Sequence
(BLAST)

001: LLTPLRLSLA SSLLLPPLSP PSPPPSSVLI LRRRAVRFSS VVTSLLSLAG DGLYAGSNSS LVRLFRGRSG LKVKRCCPGN IAWVLMLLLL RGPCLQLQEK
101: AAMATDESTA DHRRNRPSSH DMDLSGDDHV PKARKPYTIT KQREKWTEEE HKRFLEALQL HGRAWRRIQE HIGTKTAVQI RSHAQKFFSK VVTRESSGSS
201: SGSGAAAATP TAAIQIPPPR PKRKPAHPYP RKADDGKHVQ GLTRLERPPV RMCEQEEGSP TSVLTASRVE ASGGGFSNNS SSSRSPAPSA AGSLYGSSVD
301: RGDGCLSPNT KFQASEFTAN GDAKEGSCTG SETSVLKLFG KKVVVNDTYQ KPNTSTGNLQ NGGDVGTEAS DDTTTQGSRN LPSGGATEGS SWTPWPSSMQ
401: QFVYFVPQPD GFTTQSAMVP WFGTLPGAMF YQQAVAPNQH QRHRSETADN KFMQREGSWT GSNTGPGSAV HNSDAADSRG RGNSSESDKT PLPRLTKCES
501: SVSVSLQRGF MPYKRCSAES ESLRSEAPRE ETDGELTRLC L

Best Arabidopsis Sequence Match ( AT5G17300.1 )
(BLAST)

001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL

Arabidopsis Description

RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.