Factsheet for TraesCS6D01G241900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G288500.1	Wheat	nucleus	97.1	97.32
TraesCS6A01G261100.1	Wheat	nucleus	96.44	91.54
HORVU6Hr1G066450.2	Barley	golgi, mitochondrion, plastid, vacuole	91.54	75.97
Os02t0685200-01	Rice	nucleus	65.48	59.88
EES05718	Sorghum	nucleus	57.91	57.14
Zm00001d051480_P001	Maize	nucleus	48.33	54.94
Zm00001d017642_P001	Maize	nucleus	53.9	51.82
TraesCS2D01G456900.1	Wheat	nucleus	35.41	38.22
GSMUA_Achr8P13440_001	Banana	nucleus	30.51	36.15
Solyc03g098320.2.1	Tomato	nucleus	29.18	28.6
PGSC0003DMT400065850	Potato	nucleus	28.73	27.68
TraesCS6D01G239800.1	Wheat	nucleus	17.15	26.92
TraesCS7D01G540700.3	Wheat	nucleus	28.95	26.92
TraesCS7D01G014900.2	Wheat	nucleus	16.48	26.15
GSMUA_AchrUn_...	Banana	nucleus	26.06	25.05
GSMUA_Achr11P...	Banana	nucleus	25.84	24.27
TraesCS1D01G111400.1	Wheat	mitochondrion	11.8	23.98
TraesCS3D01G134000.1	Wheat	nucleus	14.7	22.15
TraesCS7D01G458000.1	Wheat	nucleus	16.04	21.11
TraesCS7D01G295400.1	Wheat	nucleus	28.06	16.87

Protein Annotations

EnsemblPlants:TraesCS6D01G241900.1	EnsemblPlantsGene:TraesCS6D01G241900	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	InterPro:SANT/Myb
PANTHER:PTHR12802	PANTHER:PTHR12802:SF60	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	TIGR:cd00167	TIGRFAMs:TIGR01557	MapMan:15.5.2.2	:	:

Description

No Description!

Coordinates

chr6D:-:344177006..344179553

Molecular Weight (calculated)

48090.3 Da

IEP (calculated)

8.484

GRAVY (calculated)

-0.852

Length

449 amino acids

Sequence
(BLAST)

001: MACTQENAMA TDESTADHRG SRPSSHDMDL SGDDHVPKAR KPYTITKQRE KWTEEEHKRF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVTRE
101: SSGSCSGSGA AAATATAAIQ IPPPRPKRKP THPYPRKADD GAAAGGKHAP GLTHLERPPV RMGEQEEGSP TSVLTASRVE ASGGRFSYNS SGSRSPVPSA
201: AGSLYGSSVD RGDGCLSPNT TKASEFTANG DVKEGSCTGS ATSVLKLFGK KVVVNDSFQK PNTSTGNPQN GGDVGTEASD DTTTQGSRNL PSGGATEGSS
301: WNPWPSSMQQ FVYFVPQPDG FATQSAVPWF GTLPGAMFYQ QAMAPNQHQR HRSETADHKF MQREGSWTGS NTGPGSAAHN SDAADSRGRG NSSESDKTPV
401: PRLTKCESSV SVSLQRGFMP YKRCAAESES LRSEAPREET DGELTRLCL

Best Arabidopsis Sequence Match ( AT5G17300.1 )
(BLAST)

001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL

Arabidopsis Description

RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.