Factsheet for HORVU7Hr1G070870.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G055250.1
HORVU2Hr1G063420.1
HORVU2Hr1G092930.1
HORVU4Hr1G069390.1
HORVU4Hr1G090280.3
HORVU5Hr1G097230.1
HORVU7Hr1G070870.2	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	HORVU7Hr1G070870.2	AT2G46830.1	14978263
AT2G46830.1	HORVU7Hr1G070870.2	AT2G46830.1	22715042
AT2G46830.1	HORVU7Hr1G070870.2	AT2G46830.1	22715042
AT2G46830.1	HORVU1Hr1G055250.1	AT3G60250.1	10535927
AT2G46830.1	HORVU2Hr1G092930.1	AT3G60250.1	10535927
AT2G46830.1	HORVU4Hr1G090280.3	AT3G60250.1	10535927
AT2G46830.1	HORVU1Hr1G055250.1	AT3G60250.1	14978263
AT2G46830.1	HORVU2Hr1G092930.1	AT3G60250.1	14978263
AT2G46830.1	HORVU4Hr1G090280.3	AT3G60250.1	14978263
AT2G46830.1	HORVU1Hr1G055250.1	AT3G60250.1	9724822
AT2G46830.1	HORVU2Hr1G092930.1	AT3G60250.1	9724822
AT2G46830.1	HORVU4Hr1G090280.3	AT3G60250.1	9724822
AT2G46830.1	HORVU1Hr1G055250.1	AT4G17640.1	9724822
AT2G46830.1	HORVU2Hr1G092930.1	AT4G17640.1	9724822
AT2G46830.1	HORVU4Hr1G090280.3	AT4G17640.1	9724822
AT2G46830.1	HORVU1Hr1G055250.1	AT5G47080.1	9724822
AT2G46830.1	HORVU2Hr1G092930.1	AT5G47080.1	9724822
AT2G46830.1	HORVU4Hr1G090280.3	AT5G47080.1	9724822
AT2G46830.1	HORVU2Hr1G063420.1	AT5G67380.1	14978263
AT2G46830.1	HORVU4Hr1G069390.1	AT5G67380.1	14978263
AT2G46830.1	HORVU5Hr1G097230.1	AT5G67380.1	14978263
AT2G46830.1	HORVU2Hr1G063420.1	AT5G67380.1	9724822
AT2G46830.1	HORVU4Hr1G069390.1	AT5G67380.1	9724822
AT2G46830.1	HORVU5Hr1G097230.1	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G299400.3	Wheat	nucleus	92.89	89.28
TraesCS7D01G295400.1	Wheat	nucleus	92.89	89.16
TraesCS7B01G188000.1	Wheat	nucleus	91.91	89.05
PGSC0003DMT400029394	Potato	nucleus	7.53	79.41
Os08t0157600-01	Rice	nucleus	73.36	73.16
Zm00001d049543_P003	Maize	nucleus	69.6	69.31
EES13385	Sorghum	nucleus	70.71	67.87
CDY61862	Canola	nucleus	34.17	41.81
Bra030496.1-P	Field mustard	nucleus	34.03	41.64
CDX80750	Canola	nucleus	32.91	41.62
Bra033291.1-P	Field mustard	nucleus	33.75	39.87
CDX90004	Canola	nucleus	33.75	39.8
CDY15205	Canola	nucleus	33.89	38.94
GSMUA_Achr1P06360_001	Banana	nucleus	39.05	38.57
AT2G46830.1	Thale cress	nucleus	32.64	38.49
AT1G01060.7	Thale cress	nucleus	34.45	38.29
CDX80051	Canola	nucleus	29.43	38.22
KRH06339	Soybean	nucleus	39.19	37.47
KRH47757	Soybean	nucleus	38.91	37.2
KRH68974	Soybean	nucleus	38.35	36.76
VIT_15s0048g02410.t01	Wine grape	nucleus	39.47	36.71
CDY64825	Canola	cytosol, nucleus, plastid	7.95	36.31
Solyc10g005080.2.1	Tomato	nucleus	36.68	34.51
GSMUA_Achr10P...	Banana	nucleus	28.31	33.61
KRG97259	Soybean	nucleus, plastid	37.8	33.09
HORVU6Hr1G066000.1	Barley	nucleus	11.44	28.98
HORVU7Hr1G001830.3	Barley	nucleus	10.88	28.78
CDY41563	Canola	nucleus	29.43	28.06
HORVU0Hr1G031850.1	Barley	nucleus, plastid	11.44	24.62
HORVU2Hr1G104580.2	Barley	nucleus	15.76	24.46
HORVU7Hr1G121210.4	Barley	nucleus	16.46	24.03
HORVU6Hr1G066450.2	Barley	golgi, mitochondrion, plastid, vacuole	18.13	24.03
HORVU7Hr1G107550.3	Barley	nucleus	11.02	18.68
HORVU3Hr1G025030.1	Barley	nucleus	9.48	15.85
CDX80052	Canola	cytosol	0.42	1.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.1	ProteinID:AEW48244.1	ProteinID:AEW48246.1	EMBL:AK360966
UniProt:F2DAQ2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU7Hr1G070870	EnsemblPlants:HORVU7Hr1G070870.2
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR12802	PANTHER:PTHR12802:SF43	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI0002006199	SEG:seg	:	:	:	:

Description

Circadian clock associated 1 [Source:UniProtKB/TrEMBL;Acc:F2DAQ2]

Coordinates

chrchr7H:-:385861847..385872203

Molecular Weight (calculated)

77744.4 Da

IEP (calculated)

6.817

GRAVY (calculated)

-0.704

Length

717 amino acids

Sequence
(BLAST)

001: MEINSSGEET VIKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ IRSHAQKFFT KLEKEAINNG TSPGQAHDID IPPPRPKRKP
101: NCPYPRKGCL SSETPTREVP KSSVSLSNSN SQMESNGTLQ VTSTQKLQRK ELSGNGSCSE VINIFREAPS ASFSSSNKSS SNHGVSGGIE PTKTEIKDMA
201: AMERKSTSVD VAKDVKDIND QEMERNNRVH ISSKYDRSHE DCLDSSMKHM QLKPNTVETT YTGQHVASAP LYQMNKTGAT GTPDPGTEGS HPDQTNDQVG
301: GANGSMDCIH PTLPVDLKFG SSSTAQPFPH NYSGFAPTMQ CQCNQDAYRS SVDMSSTFSN MLVSTLLSNP TVHAAARLAA SYWPAADSNI PVDPNQGIFA
401: QNAQGRHIVS PPSMASVVAA TVAAASAWWA TQGLLPLFAP PMAFPFVPVP TASFPTADVQ RATENCPVDN APKECQVAQG QGQPEAMIVV ASSGSGESGK
501: GEVCPHTELN ISLADKAETT PATGAETSDA LGNKKKQDRS SCGSNTPSSS DVEAEHVPEN QDQANDKTQQ ACCSNSSAGD MNHRRFRNIS STNDSWKEVS
601: EEGRMAFDKL FSRGKLPQSF SPPQAEGLKV VPRGEQDEAT TVTVDLNKSA AVMDHELDTL VGPRASFPIE LSHLNMKSRR TGFKPYKRCS VEAKENRVPA
701: ADEVGTKRIR LDSEPST

Best Arabidopsis Sequence Match ( AT1G01060.4 )
(BLAST)

001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST

Arabidopsis Description

LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.